RNA id: TU227049


Basic Information

Item Value
RNA id TU227049
length 342
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G191763
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6219812 ~ 6220381 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGTCTCTCATCTTCAGAGACCACTTCACATAGTGTCCCACGCACAGCTAAAGCATCACATGAGCCATTTCCCCCTTGGTTCTTTGGTGTGCAGCCCACTGCCTCTGCAACAGACAGGTCAAAtCACAATCAGGCACATCAGCCCTTCCTAAGATGCCCTCCTCCACACGCTCCTGGCTATGATCATGATGTCCGCCAGTGGAAGTGTTCCCATCAGGAAAGGATCTGGATGAAGACAGAGCTGGAATCCATGAGTCTATGGCTAGGGTTGCCTCCTGTGAGATATATCTTTTGCTTACATCTTTCACTTGTGGTGAATATTTAactaatgtatttttttt

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227047 lncRNA downstream 418 6218706 ~ 6219394 (-) True G191762
TU226872 lncRNA downstream 281599 5935653 ~ 5938213 (-) False LOC113527731
XR_003402884.2 lncRNA downstream 281633 5935856 ~ 5938179 (-) False LOC113527731
TU226871 lncRNA downstream 281649 5935539 ~ 5938163 (-) True LOC113527731
TU226870 lncRNA downstream 281649 5935653 ~ 5938163 (-) False LOC113527731
TU227058 lncRNA upstream 31041 6251422 ~ 6252182 (-) True G191772
XR_004579134.1 lncRNA upstream 39484 6259865 ~ 6261598 (-) True LOC117598466
TU227074 lncRNA upstream 70030 6290411 ~ 6290912 (-) True G191786
TU227076 lncRNA upstream 73149 6293530 ~ 6295793 (-) True G191788
TU227251 lncRNA upstream 243107 6463488 ~ 6488739 (-) True G191947
XM_034309407.1 mRNA downstream 54878 6163064 ~ 6164934 (-) True LOC117598588
XM_034309406.1 mRNA downstream 64930 6153790 ~ 6154882 (-) True LOC117598586
XM_034309552.1 mRNA downstream 84692 6129107 ~ 6135120 (-) True LOC117598661
XM_034309551.1 mRNA downstream 84698 6133944 ~ 6135114 (-) False LOC117598661
XM_034309357.1 mRNA downstream 109685 6108981 ~ 6110127 (-) True LOC117598565
XM_026915431.2 mRNA upstream 48492 6268873 ~ 6270634 (-) True rbp4
XM_026915432.2 mRNA upstream 64679 6285060 ~ 6299979 (-) True fra10ac1
XM_026914548.2 mRNA upstream 197095 6417476 ~ 6436006 (-) True noc3l
XM_026914550.2 mRNA upstream 197095 6417476 ~ 6436005 (-) False noc3l
XM_026914996.2 mRNA upstream 217298 6437679 ~ 6460359 (-) False tbc1d12b
TU226699 other downstream 443792 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 605858 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 746342 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 917607 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 1156417 5059527 ~ 5063395 (-) False LOC113527048
XR_004579320.1 other upstream 327690 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2237946 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2254878 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2627281 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2856408 9076789 ~ 9076860 (-) True trnaa-ugc_6

Expression Profile