RNA id: TU227076


Basic Information

Item Value
RNA id TU227076
length 1709
lncRNA type intronic
GC content 0.41
exon number 3
gene id G191788
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6293530 ~ 6295793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaactgtcctgttaaatattaaacttaATTGATGTTATGTATACAATATTAATAGGAACGTGTACAcccctgcttattcatgcaattatccaatcagccaatcatttggcagctGCAACATGTCAAAAGCTTCTGTTTATGTTCACacaaaaacatcagaatgggaggAAAATACGATTCATTGATTTTAAccgtgacatggttgttggtgccggagatgctggtttgagtatttcagaaactcctgggattttcacacacaacagtatctagagtttacacagaatggtgcataAAACaatgatgagagaggtcagaggagaacaaCTACATTGGTCTGAGCTTAAAGGAAGGCTACGGAAACTCatttaaccactctttacaaacatggagagcagaaaagcagaaaaatgagCTACAGCTGCAGAAGAACACATTGAGTTATAGTCTTTTCGGTCAAGAACGGGAATCTAGGGCTAGAGTTGTCActggctcaccaaaactggacagtttaaaATTGTAACAAGGCCAAGTGATGTTTGAACCTGcactcactgtagcctcagactgGTTTAAGTCACTAAgatctcatttttttcacaatctgatgtttgatgtgaacattaactgaagcttggTCTCTCTCACTCGTTTGCCTCGCGCCTCCGGGATTGGATGTTTGAAATCCGCCTCAGCCCTGAgtgcgcagagtttgcatgttctccctgttctttgggggttttctccaggtactccagtttcctcacaaagacatgcgctgtaggctgattggcatttccaaattgtccataatgtgtgaatgggtgtgtgggaatgtgagtgtgtgtgcttttgtgccctgagatgggttggcactccatccagggtgtccttgtgcctgagttccctgggataggctccaggttccctcacgaccctgtgtaggataagccatacagagaatggatgatctgcacatgaacatttttattagttaaCTACAACTAAACATTTAGCTGTTTACAGAGGTTATGGGATGTGTTGCCTCATCCACAGAGTGAACCATGTTATTATCATAAGCATTGATTCCTCCACCCCCAGTTATAATTTTTGGATCTGGAAAGACATGCTTTTCTTTTGGTATGTCAGCTTGTGAATCTTGCTACACTCATTGTCCAGGACTAATAAATAGTGCCACTAGATGGAGATAGAGATTCAGACTTCATGCTGTGCCCAAGCAGGTACAATAAATCACAAAAGACTTTTATTAATCACAGCCACCTGCCTTTTGCAGAAAGGTTGCACTACTTATATCATTTTTGTAATTCTATAGGTAACAGATAGGACAATTGATTGACTATTAGATGCTGTAATATAAGATATTATAAGTTGTTCCGGTCCTGGGTTTTGGGTGCGGACCAGATGATTGATAGGTGTAATAGGCCTGTTTAAGTGAATTTATATAgctttatacactatatggccagaagtatgtggacacctgaacatcacacttaTATGTGAtgttccccaaactgttgctgcaAAGTGGAAGCACAGAGTCGTCTAGAaggtctttgtatgctgtagaattaagaTATAACTATGatctaagaggcccaaacctgttccagcatgacaatgcccttgtgcacaaagcaaggtcaatgaaaacatggtttgccaaggacGGAGTGGAAGAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227074 lncRNA downstream 2618 6290411 ~ 6290912 (-) True G191786
XR_004579134.1 lncRNA downstream 31932 6259865 ~ 6261598 (-) True LOC117598466
TU227058 lncRNA downstream 41348 6251422 ~ 6252182 (-) True G191772
TU227049 lncRNA downstream 73149 6219812 ~ 6220381 (-) True G191763
TU227047 lncRNA downstream 74136 6218706 ~ 6219394 (-) True G191762
TU227251 lncRNA upstream 167695 6463488 ~ 6488739 (-) True G191947
TU227253 lncRNA upstream 167695 6463488 ~ 6473583 (-) False G191947
TU227256 lncRNA upstream 182396 6478189 ~ 6478817 (-) True G191949
TU227257 lncRNA upstream 183974 6479767 ~ 6481169 (-) True G191950
TU227332 lncRNA upstream 249239 6545032 ~ 6546253 (-) True G192012
XM_026915431.2 mRNA downstream 22896 6268873 ~ 6270634 (-) True rbp4
XM_034309407.1 mRNA downstream 128596 6163064 ~ 6164934 (-) True LOC117598588
XM_034309406.1 mRNA downstream 138648 6153790 ~ 6154882 (-) True LOC117598586
XM_034309552.1 mRNA downstream 158410 6129107 ~ 6135120 (-) True LOC117598661
XM_026914548.2 mRNA upstream 121683 6417476 ~ 6436006 (-) True noc3l
XM_026914550.2 mRNA upstream 121683 6417476 ~ 6436005 (-) False noc3l
XM_026914996.2 mRNA upstream 141886 6437679 ~ 6460359 (-) False tbc1d12b
XM_026914995.2 mRNA upstream 141886 6437679 ~ 6460359 (-) True tbc1d12b
XM_026915245.2 mRNA upstream 169222 6465015 ~ 6504729 (-) True LOC113527434
TU226699 other downstream 517510 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 679576 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 820060 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 991325 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 1230135 5059527 ~ 5063395 (-) False LOC113527048
XR_004579320.1 other upstream 252278 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2162534 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2179466 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2551869 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2780996 9076789 ~ 9076860 (-) True trnaa-ugc_6

Expression Profile