RNA id: TU227253


Basic Information

Item Value
RNA id TU227253
length 1430
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G191947
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6463488 ~ 6488739 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttttataaggaaatgagctgtaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgactgtcacactttcttcttatttttgcagcgaaacccagcagccttcattatgtttttatctgaaaagtgtctcttatgtaatacgctgctttctttactgacatccaaacgtttttctgtaacatttaatattgtactggaaaactaatgtttgcaAATCTAACATGGTTTcatactgactcgataatgtagaagtcataaaataaaaatcggtaacaaagtttgtactaaataaaatagggtgccaagacttttccACAGTGCTGTACATGTAATTGCATTAAACACACCTTAATTGGCGCATGTGTTGCTATAGTGAGCCAATAAAACAACAGCAGGCTAGGCTGATTCAAGGAAATAAAATGTCGTACGAAAAAGGGAGGGGGAAAGGTGGTGaggtgcttttgtgtgtgtgtttttttttaaatatagctgCTTTAATGAAACTGAACCACAATTCCAACCTCACCTTTGGATTGTTACGTGAACACTATTTATAGCTAGGATTTTGTTCGTTTTAGAATAGGTCAGCTTTAATTACAGCTTTAATTAGAGCAAGTTTCCATCCTGAACAAATAAACGCATCCTTATTTCATATCAACAAAATGCTGAAAGAAGTTAATCAACCGACCACAATGAATAAAACTGTGTctggtgtgttttagtgttgaTAGGATATTAAACATAAGTATAATAACATCATATTATGACATGCAACTCTACTTACTCTTCATGCTACAGGCTACTTGATGATattgattttgattatttaactaCAAATCAAgcgttttggtttttttttttaagaatgttaaATTCGTACGCTCAAATTTCCACACGTCGACCAATCATCGGTTTAATTTTACCGATACACCAaagatgaaatggatgaataagGAACTTTTGATGGAATTTGCGTACACTCGTCTTTCGATCCGATTTGCCTGTAAACAACTTGAATAAGGGCCTATGAGAGCAGATATTGAATGGTagatgtttacatttataaacagcCTTCAATAAATTGTAACTCTATCGAGTATGAACTTTTGTCTAGGTTTTTTATGTGGCTAACTACTCCGATAATGACAGACGACGTTTCGTTTAATTCTGATTGCTAGTTAGCCAGCACTTAACTAACTAGCAGACCAGCTAGCAAGCAAGCCCTTGTTGATGTTAACAAGGGTGTGTGGAAAACAGTATTGGGAATGCAGAGATAGTTTTCACTGAATCCTTTCCTCCTAAACATGGTGGACAGTGCGTCTTAACAGTAGCTGAGTTACTGACATTAGCTGACATTAAGAATGACATGACTCAAGCAACTCTTACGCCGTTGTCACGTAACGTCTCTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227076 lncRNA downstream 167695 6293530 ~ 6295793 (-) True G191788
TU227074 lncRNA downstream 172576 6290411 ~ 6290912 (-) True G191786
XR_004579134.1 lncRNA downstream 201890 6259865 ~ 6261598 (-) True LOC117598466
TU227058 lncRNA downstream 211306 6251422 ~ 6252182 (-) True G191772
TU227049 lncRNA downstream 243107 6219812 ~ 6220381 (-) True G191763
TU227256 lncRNA upstream 4606 6478189 ~ 6478817 (-) True G191949
TU227257 lncRNA upstream 6184 6479767 ~ 6481169 (-) True G191950
TU227332 lncRNA upstream 71449 6545032 ~ 6546253 (-) True G192012
TU227335 lncRNA upstream 147887 6621470 ~ 6622643 (-) True G192014
TU227400 lncRNA upstream 316283 6789866 ~ 6790153 (-) True G192070
XM_026914996.2 mRNA downstream 3129 6437679 ~ 6460359 (-) False tbc1d12b
XM_026914995.2 mRNA downstream 3129 6437679 ~ 6460359 (-) True tbc1d12b
XM_026914548.2 mRNA downstream 27482 6417476 ~ 6436006 (-) True noc3l
XM_026914550.2 mRNA downstream 27483 6417476 ~ 6436005 (-) False noc3l
XM_026915432.2 mRNA downstream 163509 6285060 ~ 6299979 (-) True fra10ac1
XM_026915558.2 mRNA upstream 34267 6507850 ~ 6513085 (-) True abi3b
XM_034309642.1 mRNA upstream 73358 6546941 ~ 6594390 (-) True itga3b
XM_026914793.2 mRNA upstream 163772 6637355 ~ 6646574 (-) True dlx4b
XM_026915153.2 mRNA upstream 253998 6727581 ~ 6740582 (-) True kat7b
XM_026915156.2 mRNA upstream 273469 6747052 ~ 6752732 (-) True g6pca.1
TU226699 other downstream 687468 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 849534 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 990018 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 1161283 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 1400093 5059527 ~ 5063395 (-) False LOC113527048
XR_004579320.1 other upstream 74488 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 1984744 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2001676 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2374079 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2603206 9076789 ~ 9076860 (-) True trnaa-ugc_6

Expression Profile