RNA id: TU227257


Basic Information

Item Value
RNA id TU227257
length 1382
lncRNA type intronic
GC content 0.38
exon number 2
gene id G191950
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6479767 ~ 6481169 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAtggaacaactatttatagctgctataatgcgagtgattacaggaactaacttgtcttgacgttttacaacaataaatgtaactataaacagttaaaaagcatgatgtgtccctcaataataaatttaaaattgtaattgctggcaaattgctgtggaataagagaaATAATGCACTtaagggacatgctgttattggaaaataacccACTTTGGGGTGAGAACAGTAACTGTTTAGCACTGGGCCACATCACCATCctagtcactgattattttcctataacggcatgcCCCGTCATGTTGTATTCCTTACTcgatcaacaccttctgaccaatcagattcaagaaatCAATAGTGCCATCTTTTCTGCGTTGGGTCTGGCATTTCCGGCTCGTTATTATCTAAGCAAGAAGCCTGCgtttaatttttagttttaattgtttatatttgcGATAACTGGACTGAATTAAAGTAGTTATATATGGTGAAAAGAAACCACAGAAGCCcacagcttcagcttcagtaGTGTATTACATTCTACCCAGAAACAGGCGCCTATTGTCCTGAAATCCAGGGAGCCAgatttcagtgattttaatgataaacaactaaaaaacaaacaaaatacaggAAAAGACCCAAAAACTGGAACAACAAAGGACTAGACCAAGCAGGACAAGGCAAAGAAATCCTAACATGAAAACGGAAATTACTCgtgacgtgacgtgacgtgacgtgacgtgacaGCAACAGTGCAACCTCATGTAATGCTTCACAACCAAGGAgggaaaaacacagaacttaaatagtgtGACTAATTAGGGAAACATaaaacaggtgtgcacaaacacaggaagtgaggcagacaacaaaagaagaaatttaaaaaaatgagtgccctctggtggtctgggaacGAATTGTCCATAGTGGACATGACACCTATGTGGTATTACATTataatttgttttcattgttgGTTAAGTAAACAATGCGTAGCATATAAAATCCCCAATAATGAATAGTCATAATGGACATAATCAAATGTGTCGACTAATTGTTGCAGCCCTAGATTCACGGAATATGAATCTTTGTACCTATCTTCTGGATCTTCTAAATTAGTCAATTAGTATAAGATCACAGTATGTTGTTTGAGACCCGAGCTTACAACTATGAGGTTCATGTTCATGATGATGTTGGCATCATCTTGCATCATGTCACGAGTGGATGAATGTGAAAGGATTGTGGTTAACATCACCAGATATTAAGAAGCATGCTCACTTTGCAGTGCAGGAGATATGTGCTGTGTGTAGCCATGTCCGTTTGTGAGTCTTGCCTCATTTTGTTGAATTTGCACCTGAATGTTACTTGTGATCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227256 lncRNA downstream 950 6478189 ~ 6478817 (-) True G191949
TU227253 lncRNA downstream 6184 6463488 ~ 6473583 (-) False G191947
TU227076 lncRNA downstream 183974 6293530 ~ 6295793 (-) True G191788
TU227074 lncRNA downstream 188855 6290411 ~ 6290912 (-) True G191786
XR_004579134.1 lncRNA downstream 218169 6259865 ~ 6261598 (-) True LOC117598466
TU227332 lncRNA upstream 63863 6545032 ~ 6546253 (-) True G192012
TU227335 lncRNA upstream 140301 6621470 ~ 6622643 (-) True G192014
TU227400 lncRNA upstream 308697 6789866 ~ 6790153 (-) True G192070
TU227391 lncRNA upstream 314942 6796111 ~ 6796506 (-) True G192061
TU227392 lncRNA upstream 318473 6799642 ~ 6800076 (-) True G192062
XM_026914996.2 mRNA downstream 19408 6437679 ~ 6460359 (-) False tbc1d12b
XM_026914995.2 mRNA downstream 19408 6437679 ~ 6460359 (-) True tbc1d12b
XM_026914548.2 mRNA downstream 43761 6417476 ~ 6436006 (-) True noc3l
XM_026914550.2 mRNA downstream 43762 6417476 ~ 6436005 (-) False noc3l
XM_026915432.2 mRNA downstream 179788 6285060 ~ 6299979 (-) True fra10ac1
XM_026915558.2 mRNA upstream 26681 6507850 ~ 6513085 (-) True abi3b
XM_034309642.1 mRNA upstream 65772 6546941 ~ 6594390 (-) True itga3b
XM_026914793.2 mRNA upstream 156186 6637355 ~ 6646574 (-) True dlx4b
XM_026915153.2 mRNA upstream 246412 6727581 ~ 6740582 (-) True kat7b
XM_026915156.2 mRNA upstream 265883 6747052 ~ 6752732 (-) True g6pca.1
TU226699 other downstream 703747 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 865813 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 1006297 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 1177562 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 1416372 5059527 ~ 5063395 (-) False LOC113527048
XR_004579320.1 other upstream 66902 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 1977158 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 1994090 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2366493 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2595620 9076789 ~ 9076860 (-) True trnaa-ugc_6

Expression Profile