RNA id: TU227356


Basic Information

Item Value
RNA id TU227356
length 1539
RNA type TUCP
GC content 0.38
exon number 6
gene id LOC113527389
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6725321 ~ 6728391 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACTGCAGACTTCACCACatcctcccaaaaaaaaaacaaaaaaacaaaagaataatcCACCGGCACTtcagctgatttaaaaaaaaattattcacgAATAATTTTTTTCAACCATAGACTCATCGTATCAATTCACTGATTGATTGataacatcatttttttttctctctttctgataATGGAAATTTGGAGACTGCTGGCTGTAATCATCACCGTGGGTGTCCTTGCATGCAGTGCTCAAGGAATGTCCCTTACTCTTGACAAGGAACACTGGATTTCCAAAAACTGGGAGGACAAACCTTTGGTGGACACTTTAGTGAGTGAAGTGGCAAGTCTAATCAAGAGATCCAAAGCACACCAGTTCTACGGTCTAATGGGAAAACGTGCCGATATTCCTCAGCGTACGAAATTGGGTCAGAAAAGAAATAAAGGAGAGAAGTTTGTTGGACTCATGGGTAGATCATTAAGAGATACATTCACAAGAATAATCCCAGCCGAGACCAGTACAGCTATGCAATCAGACAAGCAATCAGATTTGCAGGAGGGATGGAACAATCCTCAATATTACTGACAGTCACGATACTGTGAGAGCATTTTCATATTTAGAAGAAAGCATAAGCATCCTTTAACATGTAAATTAAGCCTGAAGTGAAATAAACTGTTATTACTTGTTGCACAAAAAGGTCTTCACATGCATATgtaaaaaacaggaaaagtaTCAAAAATGTGCACTTTTCAATGTTTTATTTGAGATCTGagcatcaacaaaaaaaaaatttcaaggaATGAAAAGTGAAGAGCTCACAGAGAAGGAAAAGATGAAATACTGCTTGTGTGCTAATTATGCTATTCTGAAATTGAATTGTATTAAACCCAATGCATAAAACACAGGTGTGGAATTCCTGTCGTGGGAGGCGCCTGTCATGTGCAGCTGTCAGTAAAGTGTCATCCCTGATATAAAAACACCTGATTGAAGTATTCAGTTAATTACCAAGACCTTCATCAGTTGAACTGGGTGTGAGAGCTGCGTAAATACTTTGTAGTGACGCCTACACTTTGAAACTGACTGGGCCAGCCCAATTCCTATCATTATATAAAGTTTAGTTTCATCAGAGCTGAGCCGGTTAATCAAGGGCTTCAGTAACATCTGAATATTAAGGTGTGTTGGAATTAAACTCTTTTAAGATTTGGGTGTATCTTCTTTAATTCAATGTCAAATGTCATCCTTTGAAACGCAAAACACTCCGAAATGTGTGCTCAAAAGAGAGGATCTGTAAAATAATTACAGCTACACAAGAACTAAAAAAATTACTACACAGACAGAAGTACAAAGGCCACACAGAGACCAAAATAACAATGAACGCTGTAAATTCATTGGAACAAACGCTGACATATGTAAAAGGCTGAAATTGGAGAAAAGGGTATTCAATGGGATTTCCTAGGTTCCTTTGGGAGGGGTCCATTTCAGTGAATTTGGATCTATGGTCTTGTTGCTGGTGCCTCGTTTGGTCTCTTTTGCTTTCCAATCATCAATCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227354 lncRNA upstream 28351 6696732 ~ 6696970 (+) True G192029
TU227167 lncRNA upstream 251855 6463389 ~ 6473466 (+) True G191868
TU227164 lncRNA upstream 264307 6460811 ~ 6461014 (+) True G191866
TU226989 lncRNA upstream 454436 6268524 ~ 6270885 (+) True G191719
TU226978 lncRNA upstream 508227 6215273 ~ 6217094 (+) True G191711
TU227373 lncRNA downstream 49773 6778164 ~ 6785596 (+) True G192043
TU227745 lncRNA downstream 670952 7399343 ~ 7399628 (+) True G192394
TU227775 lncRNA downstream 746046 7474437 ~ 7475004 (+) True G192422
TU228011 lncRNA downstream 1210650 7939041 ~ 7939584 (+) True G192591
TU228075 lncRNA downstream 1340752 8069143 ~ 8071592 (+) True G192650
XM_026914756.2 mRNA upstream 102674 6618651 ~ 6622647 (+) True dlx3b
XM_026915208.2 mRNA upstream 179068 6526233 ~ 6546253 (+) True ace
XM_034309170.1 mRNA upstream 308512 6330477 ~ 6416809 (+) True plce1
XM_034309175.1 mRNA upstream 308512 6330477 ~ 6416809 (+) False plce1
XM_034309173.1 mRNA upstream 308512 6330477 ~ 6416809 (+) False plce1
XM_026915158.2 mRNA downstream 11362 6739753 ~ 6745801 (+) True ptges3l
XM_026915155.2 mRNA downstream 25802 6754193 ~ 6757138 (+) True g6pca.2
XM_026915438.2 mRNA downstream 67616 6796007 ~ 6815445 (+) True sgms1
XM_026915437.2 mRNA downstream 67616 6796007 ~ 6815445 (+) False sgms1
XM_026915436.2 mRNA downstream 76787 6805178 ~ 6815445 (+) False sgms1
trnas-gcu_4 other upstream 495018 6230222 ~ 6230303 (+) True trnas-gcu_4
trnas-gcu_3 other upstream 500136 6225104 ~ 6225185 (+) True trnas-gcu_3
trnal-aag_3 other upstream 501215 6224025 ~ 6224106 (+) True trnal-aag_3
trnas-gcu_2 other upstream 501704 6223536 ~ 6223617 (+) True trnas-gcu_2
trnal-uag other upstream 502523 6222717 ~ 6222798 (+) True trnal-uag
trnap-cgg_4 other downstream 42916 6771307 ~ 6771378 (+) True trnap-cgg_4
trnap-ugg_14 other downstream 44050 6772441 ~ 6772512 (+) True trnap-ugg_14
trnal-uag_1 other downstream 45212 6773603 ~ 6773674 (+) True trnal-uag_1
trnap-ugg_15 other downstream 46365 6774756 ~ 6774827 (+) True trnap-ugg_15
trnap-ugg_16 other downstream 47515 6775906 ~ 6775977 (+) True trnap-ugg_16

Expression Profile