RNA id: TU227404


Basic Information

Item Value
RNA id TU227404
length 2271
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G192074
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 6813165 ~ 6815435 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGCTAATGGTTGTCATTTATTTGCCAAAAAATTTGAAAGTGTTAGCAGCTTTTCTCATCATGTGTTGTACAGAACAGCTCATTGTTATCAGCTTATGAACAAAGTATGATCCTGCTCATTAACCACATTGGATAGGGTAGACATGATCAAAAATACTCTCGGCGATCAATGCACAAAGACACTGAAACTACTCTCCTGCCCAATAGTCGGGAATTAAAGCAGAACCAAAGACACAGCCATTTGTCTTAGACAAAATAACAGGACATGAAATATGTTCCCATATTCCATTAAGAGGAATACTTCTAGacatattgtaataaataaatttaatatacaacaacaaaaactacaACAAAACTGATTATGGACATTGGCTTGGTGGTCATTAATGGTTGAAAATTTGGTAAAAACCTTACAGTCCTTATACAACATCCTAAGTTTTGGGTATTTCCTAAAACCAAATATGCTTTGCTGGTAAAAATGAGGACAAGTGCAAAGATAGTACAAcaagcattttatatttttcttatacacTTTATTCTTAACTCCCTGTCTATGAACAACTGCTGTGAAAGTAAATTCTAGGTCTAAGGaaatatgaaagtagacactacAACCTAGCAGCTATCCAAATTTACCAAAGAAATAATACTAACATATATTGATGCCTTTACACTTACCATCAATTTCTACCAGCAATAGCTATTTACTACTtctcatgttttctttcatattttagtGCTAAATACCTCCAACCTAAATGCTGGATATTTCTGCCTTGATTTAAGGGGTCTTATCAACATTAATGTACCACTGATACCACAagcttaaaaacaaacaaacaaacaaaaacaaaaaaacacacacacgcacaaaaataataaaataataataataataaaaaaaaagaacaaacacacagaccacaGGATCTCTGTACAATCCTGGCAAGAAAGGCACTGAGGAAGTTTGTATCACCAAAAACAGTCTTTTGTCTCCTTTTGCTCTCCatgtaaaaaaatgtgacagatttactctgaaaaataaatcactatTCTTATAGAAAGCACATTTTCCAAATTTTGTGTTTAAGTGGATAGCTACAAAACTGCACTTCTCTTCAAACATGTCCTTCCCTGCAAGtcattttctgaaaaataataataataataataataataataataacaacaataaactgcaggattctcAGTTAAAGGGACACTTCTACATTTGAGTGAAGCAAACAGTCTGGAAAAAAACCCGCTGACTGGGGTAAACTTTAGATTCCACTCTGTCAAGTAGGTCTGTCATAAAACATGGCAAACTGGCTCAGTCTGTAAGCAAATGGAAATATCTGTAACTGGTTCACTTTACTGCATGTTCAAGTAACAGACAGAGGCAGATCATCTACCAAGTTAGTGATTTGTTAAAGATCACATTACCACGTGACTACTTTTGGCAGGTGCTAGGTGCTAAACGCATTCATTAGTCGCTCTGGCCCTGTGTACTACACACCACGCATCCCATAACACATCCGAGCTGAAATGCGAAGGGAATGTAGGTAGTGGGTGAGGAATGAAATGCTTTGGACGATGTTTGGATGGCCAGATGGACCGGTGCGCCCTGCAGCTGAGCGCTAAAGGGATTGGCTTCATTTGTCACATGACCTGGCACTTAAGGAAAGTCTTTGAGAGTTTCGCTCTTCAGATTGAGCGTTTACGTTCAGTCAGAATCAATCCTGCTGTACTTCACTGTGCCCCACTGTATAGATCGCCACGAGAAGGGGATGTGGTAGCTGCGAGGGACGACACCTTGCACGTTCCGCTCCAGATACTGGAAAACCCAATACCACCACACGCGTGACAGGAAGTTGTTCTGAGTTGCTgccttgagttcctgaacaATCAGAAGAGGCGTTTGGGTTCATTAATAAAGGTGAAGTTCACTCATACACCTCCAGCAGTATGAGCTGgtattaaatatacaaaaatcaCAATAATGACTGTATTAAAAAATAGTAACGCTTTACCTTAACAtcatttactgcattagttaacattaacaaacaataaacatcagcattaatacaccatacATAATTCTAATAAAGTTAAAACCTATATTATTTAATGCTTGTTTAAATGgtaagaaaacacacatgcattgactaatgtttattcaatcaatGAGTAAAAACAAGTCCACAAATtaggaaaaaattaaattacagcatgttcctAAATGTTGATAAGTTACTGTACTCTGGT

Function

GO:

id name namespace
GO:0008509 anion transmembrane transporter activity molecular_function
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227407 lncRNA downstream 3407 6808205 ~ 6809758 (-) True G192075
TU227408 lncRNA downstream 4370 6808205 ~ 6808795 (-) False G192075
TU227392 lncRNA downstream 13089 6799642 ~ 6800076 (-) True G192062
TU227391 lncRNA downstream 16659 6796111 ~ 6796506 (-) True G192061
TU227400 lncRNA downstream 23012 6789866 ~ 6790153 (-) True G192070
TU227735 lncRNA upstream 412955 7228390 ~ 7312887 (-) True G192385
TU227786 lncRNA upstream 584592 7400027 ~ 7400363 (-) False ipmkb
TU227790 lncRNA upstream 613152 7428587 ~ 7428883 (-) True G192437
TU227943 lncRNA upstream 765923 7581358 ~ 7583165 (-) False ccdc6b
TU227946 lncRNA upstream 813876 7629311 ~ 7630373 (-) True G192545
XM_026915154.2 mRNA downstream 47065 6756785 ~ 6766100 (-) True aarsd1
XM_026915156.2 mRNA downstream 60433 6747052 ~ 6752732 (-) True g6pca.1
XM_026915153.2 mRNA downstream 72583 6727581 ~ 6740582 (-) True kat7b
XM_026914793.2 mRNA downstream 166591 6637355 ~ 6646574 (-) True dlx4b
XM_034309642.1 mRNA downstream 218775 6546941 ~ 6594390 (-) True itga3b
XM_034309520.1 mRNA upstream 21002 6836437 ~ 6847966 (-) False a1cf
XM_026915451.2 mRNA upstream 21002 6836437 ~ 6847960 (-) True a1cf
XM_026915452.2 mRNA upstream 21002 6836437 ~ 6847957 (-) False a1cf
XM_026915453.2 mRNA upstream 21989 6837424 ~ 6847955 (-) False a1cf
XM_026915361.2 mRNA upstream 232136 7047571 ~ 7232075 (-) True pcdh15b
XR_004579320.1 other downstream 218775 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 1037145 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 1199211 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 1339695 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 1510960 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 1642892 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 1659824 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2032227 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 2261354 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 2261683 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile