Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU227786 |
| length | 337 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 1 |
| gene id | ipmkb |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 7400000 ~ 7418378 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU227735 | lncRNA | downstream | 87140 | 7228390 ~ 7312887 (-) | True | G192385 |
| TU227404 | lncRNA | downstream | 584592 | 6813165 ~ 6815435 (-) | True | G192074 |
| TU227405 | lncRNA | downstream | 584592 | 6813548 ~ 6815435 (-) | False | G192074 |
| TU227407 | lncRNA | downstream | 590269 | 6808205 ~ 6809758 (-) | True | G192075 |
| TU227408 | lncRNA | downstream | 591232 | 6808205 ~ 6808795 (-) | False | G192075 |
| TU227790 | lncRNA | upstream | 28224 | 7428587 ~ 7428883 (-) | True | G192437 |
| TU227943 | lncRNA | upstream | 180995 | 7581358 ~ 7583165 (-) | False | ccdc6b |
| TU227946 | lncRNA | upstream | 228948 | 7629311 ~ 7630373 (-) | True | G192545 |
| TU227929 | lncRNA | upstream | 321642 | 7722005 ~ 7740008 (-) | False | ank3b |
| TU227921 | lncRNA | upstream | 321642 | 7722005 ~ 7767502 (-) | False | ank3b |
| XM_026915361.2 | mRNA | downstream | 167952 | 7047571 ~ 7232075 (-) | True | pcdh15b |
| XM_034309523.1 | mRNA | downstream | 167952 | 7049810 ~ 7232075 (-) | False | pcdh15b |
| XM_034309522.1 | mRNA | downstream | 167952 | 7049810 ~ 7232075 (-) | False | pcdh15b |
| XM_034309524.1 | mRNA | downstream | 167952 | 7049810 ~ 7232075 (-) | False | pcdh15b |
| XM_034309521.1 | mRNA | downstream | 167952 | 7049810 ~ 7232075 (-) | False | pcdh15b |
| XM_026915835.2 | mRNA | upstream | 21603 | 7421966 ~ 7427834 (-) | True | ube2d1b |
| XM_026914632.2 | mRNA | upstream | 35146 | 7435509 ~ 7442712 (-) | False | zgc:171971 |
| XM_034309437.1 | mRNA | upstream | 35146 | 7435509 ~ 7442712 (-) | True | zgc:171971 |
| XM_034309325.1 | mRNA | upstream | 146700 | 7547063 ~ 7560750 (-) | True | fam13c |
| XM_026914557.2 | mRNA | upstream | 173713 | 7574076 ~ 7579872 (-) | True | slc16a9b |
| XR_004579320.1 | other | downstream | 805637 | 6548071 ~ 6594390 (-) | False | itga3b |
| TU226699 | other | downstream | 1624007 | 5768528 ~ 5776020 (-) | False | LOC113527291 |
| TU226617 | other | downstream | 1786073 | 5611120 ~ 5613954 (-) | True | G191430 |
| trnav-uac_7 | other | downstream | 1926557 | 5473398 ~ 5473470 (-) | True | trnav-uac_7 |
| trnai-uau_5 | other | downstream | 2097822 | 5302113 ~ 5302205 (-) | True | trnai-uau_5 |
| trnap-agg_9 | other | upstream | 1057964 | 8458327 ~ 8458396 (-) | True | trnap-agg_9 |
| trnal-uag_3 | other | upstream | 1074896 | 8475259 ~ 8475340 (-) | True | trnal-uag_3 |
| XR_004579166.1 | other | upstream | 1447299 | 8847662 ~ 8857748 (-) | False | si:dkey-94l16.4 |
| trnaa-ugc_6 | other | upstream | 1676426 | 9076789 ~ 9076860 (-) | True | trnaa-ugc_6 |
| trnal-uag_4 | other | upstream | 1676755 | 9077118 ~ 9077199 (-) | True | trnal-uag_4 |
