RNA id: XM_026915386.2


Basic Information

Item Value
RNA id XM_026915386.2
length 4157
RNA type mRNA
GC content 0.44
exon number 6
gene id ipmkb
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7400000 ~ 7418378 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTTGTGGCGACGTCGTCGTCGTCACGCATGACGTCACGCGCCTCCTGCGCCTTCTGGGATGGAGAGGCAGCACAGGAGAGCTAGCGTTGAAGTGAATGagaatgaggatgaggatgagtgtGAGTGCTAAGTGTGCTTTTCTCTCGGTTTATGGCGTGTGTTTGTTCCGGGTGGAGTGCCGTGTTGTTGTCCTTCCCCCATATCTCGGAGTAATTAGACGAGCAGCGCTGTGTAAACATCTCTGAAGTCAGGAAGTGGGATGTGGCCCGGCTCTATCTTCACTTACAGTCTGCGATGTGACACAATCCCAGCGCCTCGGGCACGCGCTGCCACTCTTCCCCGCGGATATAAGAAGACGTGAGTGATGGCATCCGCTTCATGCAGCTGGACCACGACGAGGACGACGGACGGCTTGGATTCGGCTCGTGCTGGAAGACTGAAAAGCGATACGTGTGTCGTAATGTAGCGGACTGTGGTGCattttttgttgtagttgttgttgttgcccTGACAAAGCGTCATTTGCGTCGGATAATGGACTCGTCGGTAACGCTGGGCAGGCTGGAGCTCGGGCGCGCCGCCGTGAGCCCGGGCACGCGCCTCAATGGACCGGGGGCGAGGGAAAGGAGcgcgcagcagcagcagcagcacgcGGGGCCGCGCGCGGGACCTCTCGGCTGCGTGCCGCTCTCGCACCAGGTCGCGGGCCACAAGTACGGAGTGGACAAAGTAGGTATACTGCAGCATCCCGATGGTACGGTACTAAAGCAGCTTCAGCCTCCACCCAGAGGACCCAGAGAACTGCAGTTCTATAGCATGGTTTATGCCAAGGATTGCTGTGACCCCTGCCTACTCGAGCTGCAGCAGCATCTTCCCAAGTACTACAGCACTTGGTCTTCTCCTGACAGCCCCACAGAGCTGTATCTGAAGCTGGAGGATGTCACACGCCGCTTCCAGAAGCCCTGCATCATGGACGTGAAGATCGGCCAGCGTAGCTACGACCCTTTTGCCTCACAGGAAAAGCGTGAGCAACAGATCAGGAAATACCCCCTGATGGAAGAGATTGGCTTCCTGGTGCTTGGGATGAGGGTGTACAACGTGGGCTTGGACAGCTTTGACACATATGACCAGCATTATGGAAGGGGTCTCGTGAAGGATACCATCAAAGATGGACTATGTAAGTTCTTCTACAACGGCGACCTCCTCCGCCGGGATGTCATCACTGCCAGCATCGCCAAGGTCCAGAGCATCCTTCGTTGGTTTGAAAAACAGAGCCAGTTGAACTTTTACGCCAGCTCTCTACTCTTCGTCTACGAGGGGCTTCCTTTGACCCCGGTGGAGAAATCCAGCACCCGGAGCCTACAGAAGAATGAAGGGGTTCTGGAGTACAACAACAACATCGAGCAGAGCCTCTCCACCATGTACTCCCTGCACAAGAAAAGCTGCATGCAGAACCACCATCCAAGCAAGCAGGACAACAGCGCATGGCACGGCCTCACAGAGCTGGACGCCGGCGAGCAGGAGACGGAGGAGATGCCAGCCGAGGTGGAGGTCCGAATGATCGACTTTGCCCACGTCTTCCCCAGCGAGGTCCCCGACCACGGCTACATCTACGGCCTGAGGAACCTGCTCAAGGTGCTGCAGCAGATACTggatgactaaaaaaaaaaaaaaatgttcttctcATGGTTCTTCAGCCATAATGCTCGGCTCATCTCATCAGAGAGGATATTTTTAAAGTTGTAGCTACTCTCATTCCTCTCTCCCCTGTCCAGGTCCTGCACTACCTGGACTACAATGAAGTAACCCATTTGAAAAGCTTGGTCTTATAGTTGGTCTATATGCGCctgatcgtttttttttttttttttaaatataaaaagtgttttactcAGGTAAACCAATTACATGGTCATTTATAGTATTTATCCTGGCAGCAATTCATACCATCTTAACCCTTTCTCTGTTTTGCTTCAGCATAATAGCTTGTATTTCCCAAGACAAGTTAAACAAggtattgtttttaatttgtttttacataGGTGTATCATTTGCTTCTCATGCCTGTGGTTGGTAAGACTAAGGATTTGGAGTACATAGCTGTCGATTTCTTTAACCTGCGCTGCCAAAATGACCCTgcctgtgttttttattttaaacttgcaATTGACTAGCCTACACAAATTCCCCTGTGTAAATATGGTATTATATTTTCTGTGATTTAACCATGCAATATGCTGACCCAACAATGGGGAGGCTCGGATCTTTATTGACGTTTTAAAAAACGGTCAAGTGTATTGATGAGCTGTCCTGCCTGTCgtgactgaaagaaaaaaaaaacaaacttaagTTCATACCCTTTTCGACTATCTTTAAGCCATGCTTTATTAATGCTATATTAGcttataaaatgttttgataCACTTTCCTGAGTGAATGAAACTTTATTGTGCAGACATAGTATTGATTTGAGCGCGGGAGGCAAAAACCAGCATAGTGAtcttgattattaaaaaaaaaaaaaaaaaaaaaaaaaatcactgattgaaagagggagaaaaatcactggaaaaaaaagagaggaaaaactaTTATCAAAATTAAGACCAGGATTctcagatttttcttttccctctcaGAGTCATTGGACAGctatttttgaatttgtttattatcCTTAACTTTgcattgtatttatattaacaaattctgttgcagcttttttttattattattttaaacaatcatttttaaattctagGGCATTGCAGATTTTATAGATTCTCATATAGGTGCGTAATCACTGTATACACTGACATACTTAATATGTGAAATGTATTACTCATCTCAAAGCTGATAAGTTGCTTGCTTTATTCTGCGTTTACTGCAAATATCTGGAAAGTGTTCTTTTCCAATGGAATGCATTTCACATTTTGGTTGGAACGTATATGTAGTATGTCTTATGACCTTGTCTTATGCTGAATGACTGCCGCTGCATTTGACTCGTCTGAAACTCTGATTTAACATTCCTGTTGATTTAAGCAGAACAAGGGCACGCTTTCTGCTTGTCCCCCCCGAAGAAGAAAGTCGAGCTCTGAAGGAAAAAGCAAAATTGGAATTGCATGTCTTTGGGCAAAGTCGAAACTACCTGTGTGTCTAATTCCCTGGCTCTTGTCTCACTCTCAGGAATGTATTAGTGTTACAAGGACTTCAAAGTAGTCGAGACATCCGTATGCAAGAACTCGAAGGAAACAGGCCGTGGGCCAGTTAAAGCTAGATGCATTTGTTCTGTAGCATGCGCCATTCAGTTGAGGATTTTGTTTGCATTCCAGTTATTTTTGGTCCTGCtataacatttacagcattcatgcACTGAAGCAAGTGGAAATACTGTATGATGTATACATCAGCCTTCCTGCTGTGAACTAATCCATTTGTCTctgatttgttttaaatcttattctcactcataattattttattattttttttaagcagttgCACCTGACTGAGATTTGCGCTGGTGCTCAAAGCACTTTAGTGATTTGCTAGACTGGATTTTTGCCTATGGAACTAGTTTAATTGAACTAATTGTAAAGGCATCTTACACTTCAAAGGTCTTCAAGTAGAAGAATCTAATGTTAACCATTTTGTAACCTGGTTTTgatcttactttttttttcctgtggcaaataaaaggacttttttttattttacgttctctcaaaaaaaaaaaaaaaaaaaaaaagggtaaatTTGATCTTATTAAGTATAGTTAATCTTTGCTGTCCTGGAATATGCAGGCTCATTTACGCCCGATGGTTTAAATCCAGCCCTTCAAGCAGCAGGGTTGCGCAATAAAACATGGGTTTAAGTAGCTACATTTGAATGGTTTCCCATGTGCTGTATAATTTCTGCAATCCAGAATGCAGAAACACATctgaaaagtgatttttttcaagCTGAGGCTCTGGAAGAAATAATCCAGGTTGGGGATCAGTACTGGAATGGCCATTACTCATGTGAACCCTATCCTAATAGACTAAACCAATTACAGTTTTTGTAATATAGATGTATAACATGTAATAATCAGACTCATATATTAGGTGTATATTTGGCAAATctatcattattaataaaaatcactTAATAATG

Function

GO: NA

KEGG:

id description
K00915 IPMK, IPK2; inositol-polyphosphate multikinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227735 lncRNA downstream 87113 7228390 ~ 7312887 (-) True G192385
TU227404 lncRNA downstream 584565 6813165 ~ 6815435 (-) True G192074
TU227405 lncRNA downstream 584565 6813548 ~ 6815435 (-) False G192074
TU227407 lncRNA downstream 590242 6808205 ~ 6809758 (-) True G192075
TU227408 lncRNA downstream 591205 6808205 ~ 6808795 (-) False G192075
TU227790 lncRNA upstream 10209 7428587 ~ 7428883 (-) True G192437
TU227943 lncRNA upstream 162980 7581358 ~ 7583165 (-) False ccdc6b
TU227946 lncRNA upstream 210933 7629311 ~ 7630373 (-) True G192545
TU227929 lncRNA upstream 303627 7722005 ~ 7740008 (-) False ank3b
TU227921 lncRNA upstream 303627 7722005 ~ 7767502 (-) False ank3b
XM_026915361.2 mRNA downstream 167925 7047571 ~ 7232075 (-) True pcdh15b
XM_034309523.1 mRNA downstream 167925 7049810 ~ 7232075 (-) False pcdh15b
XM_034309522.1 mRNA downstream 167925 7049810 ~ 7232075 (-) False pcdh15b
XM_034309524.1 mRNA downstream 167925 7049810 ~ 7232075 (-) False pcdh15b
XM_034309521.1 mRNA downstream 167925 7049810 ~ 7232075 (-) False pcdh15b
XM_026915835.2 mRNA upstream 3588 7421966 ~ 7427834 (-) True ube2d1b
XM_026914632.2 mRNA upstream 17131 7435509 ~ 7442712 (-) False zgc:171971
XM_034309437.1 mRNA upstream 17131 7435509 ~ 7442712 (-) True zgc:171971
XM_034309325.1 mRNA upstream 128685 7547063 ~ 7560750 (-) True fam13c
XM_026914557.2 mRNA upstream 155698 7574076 ~ 7579872 (-) True slc16a9b
XR_004579320.1 other downstream 805610 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 1623980 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 1786046 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 1926530 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2097795 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 1039949 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 1056881 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 1429284 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 1658411 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 1658740 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile