RNA id: TU227921


Basic Information

Item Value
RNA id TU227921
length 1147
lncRNA type sense_over
GC content 0.43
exon number 2
gene id ank3b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7601218 ~ 7767512 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTCTCAAACTTCAGCCTACCTGCTCACTTGTAGCGAGTTCTTAACTTCTAACTTCAGAACCTCTGAAAGCGCTGGTATCTGCAGCTGTTGTTACTCCAGGACGTTCTTACACGGTGGAAAagctttacttttcttttccgCACTGAAGCCGATGGATTAACGAGGAGTTTTGTGCAGCGTTAAATCTGTGATCTGTTCAGCTTTACTCCAGTTCAACATGGCTTCCTCCAGTGCAGGTGAACTGAATGGCATACAGGTAAGTCATCATGTGTCTGTTCTAAGCACGTACACATATACGCAAGACACTCTGTGGACAAACGCACTGAGAAAGATGATATGCTGTACCTGCACACCTCGCCTACTTCACAGCCAGCTCAGTCATCTAAGCGGTAGTCATGACTCATAAGCAATGGTAAGTGGCTCTGCCTGGGTGAACCATTTGGCTTCAACTGTTGCCGGGGAACCATGAGATTTGGAGATTGTACACAATAAATTGCAAAGTAGCGACATAGCATTTAAGGTCTAAAGGTTGTGTATTTTGGGTATAAATGCAGTTATGGGCTAGAATGAATCAGCAATTTGCTCTAGCTTTGTTTATGGCTCATTTGAATGTCACTGCTACGTAGTAGAGGATGGAAAGTGTGCTCCTTAAGGTTCACTCTTGGGGAATCCCTGGGGATGGTTTCGTTGTCCTTCTTTATCTTCCTGATTTGTCATGAAGATCTGTTGATCACTCACCAACTTGAAACAACCACATTAGAGCACTGGACTCTACAGTAGACTTTCAGGATGTGGCGAAATACATAAAATACTCCATGCAATACATAATTTAAATCAGAATTACTTGGTATTTTTGGTTTAATCTGCGAGTATTGTAATGAAAAGGTTTAAGAGTGCACTATTTAGTCTCATGGTACATTTTCCCACAGTGTGGTTTATTTGGGCAGGTGTGAACGCAGCAATCACAGTCGGGTGTGGAACAAAACAATCAGCCCATGACCTCCTGAGAGAGCCACTTCCACGTAAACCTTAATATGGTTTGATTGCAATGAGACCATAGCTCAGCTGCAGGATCTCACTGACCTGCACTGAAAGATGTTTTTCTGGTGTGTAGAATCAGACCAAACAGAAAACTAATAATCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227946 lncRNA downstream 91632 7629311 ~ 7630373 (-) True G192545
TU227943 lncRNA downstream 138840 7581358 ~ 7583165 (-) False ccdc6b
TU227790 lncRNA downstream 293122 7428587 ~ 7428883 (-) True G192437
TU227786 lncRNA downstream 321642 7400027 ~ 7400363 (-) False ipmkb
TU227735 lncRNA downstream 409118 7228390 ~ 7312887 (-) True G192385
TU228003 lncRNA upstream 72861 7840363 ~ 7841460 (-) True G192583
TU228004 lncRNA upstream 74127 7841629 ~ 7841947 (-) True G192584
TU228005 lncRNA upstream 74558 7842060 ~ 7842634 (-) True G192585
TU228034 lncRNA upstream 107264 7874766 ~ 7877699 (-) True G192611
TU228096 lncRNA upstream 206712 7974214 ~ 7977154 (-) True G192665
XM_034309161.1 mRNA downstream 18213 7601218 ~ 7703792 (-) False ank3b
XM_034309160.1 mRNA downstream 18213 7601218 ~ 7703792 (-) False ank3b
XM_034309158.1 mRNA downstream 18215 7601218 ~ 7703790 (-) False ank3b
XM_034309153.1 mRNA downstream 18215 7601218 ~ 7703790 (-) False ank3b
XM_034309151.1 mRNA downstream 18215 7601218 ~ 7703790 (-) False ank3b
XM_026914587.2 mRNA upstream 37018 7804520 ~ 7809766 (-) True tmem26b
XM_034309107.1 mRNA upstream 212054 7979556 ~ 7990069 (-) False egr2b
XM_026915476.2 mRNA upstream 212561 7980063 ~ 7982977 (-) True egr2b
XM_026915091.2 mRNA upstream 254032 8021534 ~ 8141060 (-) False jmjd1cb
XM_026915090.2 mRNA upstream 254032 8021534 ~ 8141060 (-) False jmjd1cb
XR_004579320.1 other downstream 1127615 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 1945985 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2108051 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2248535 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2419800 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 690825 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 707757 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 1080160 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 1309287 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 1309616 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU602172 True 229 lncRNA 0.45 1 CI01000385 87685 ~ 87913 (-)