RNA id: TU227943


Basic Information

Item Value
RNA id TU227943
length 1783
lncRNA type sense_over
GC content 0.39
exon number 2
gene id ccdc6b
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7581350 ~ 7595881 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atgtttatGCCAGAGAACGTTAAAGGGAGTGAAAGTAATCGATTTCCTGTTAAGCCTCAGCTTTTGGGTTGATAGAGATTTTAGTGCACCTGTAATGCAAAAGAGAACTCTCATCCGCTTTGCTTACAGAAAAGGAAGATAGAATAATATGTGAGAAATGTCTAGTGATTTATGGCATTATTACATATAAATGAGTCTTCTAACAGTAACACACTAGACACATGCAGCCAGTCAGGTGCTGCcgagagctgcttttataggcACCAGATGGGTTGGTGGGAAAGTGCAGCTAATGGCTTTTAAGGGATGCAGAAGAGCAGCCATGCCCGAGGTGCAGAAGCAGGGAGCCTGTTCAGTTCGTGCCTAATGGCAAAACATGCTCATGCAGCAATAGGTGTTTGTTCGATCTAGATAAAAGAGCATGCATGAAATGCAGTCTGGGCTCGCTAGGGAGATGAATTGCTTTCTATACACATggttaattatatatatatatatttttttttgctaagagCGTGAAAGAATGGTTTACTTATATGCTGCTGTTGGTGTATTGCAGTTTGCATCTGACTAACTGTAAACATGTATTGATACACCAGTTTATTCTTTCTTAATGAGTTCGAATGAAATGCCTTGGACTAGGCAGAAGGACAGAGGTATGTACATTGTTCTCGTACCCAGTTCACCTCCACCCACATCCTACCCTTAACAGTGTCTGTAAATGGTACCACTGTGACTTTTTCTCCCCTCACACCCCTCATAATTTGTTCTCAAGTATAGATGTGTGGAttgtttttttggaaagaaaaaaaaaaaaaaaaagggaaggaaTTCCGCTATGTACACCCTCAAGGTATAAATCTGTCACAGAGAGAAAGTGTAAATAGACACACCCCCTTTTTGTAAGCTTTGCAAATTATGCTGGGCCAGAGAAATTGTCATTTTATGAAACAAATTTCTCCCCATGATTAGTATGTGTCTGTGATCTCGTCTTCGACCTTCTCGTCTGTGGGTGCCCCTGGttcttattcatttatacagCCTGTTCCACGTTACCAAATAGCATTCAGTTAGtgcagcttaaaaaaaaaaaaaggcagaacaaaaaacacagagcaCTTACTGTCTGTTGTGAAGAACGCTAATTTACTGCAAAATTACAGCTCAAAATGAAAATCAGCTCAGTGATAGAATTACTGGTACTAAGCAGCTCCGTTGTGGTTAAGGCACAGATGTTTAGTGAGGACACTGTCAGTGGCATCAGGCCTCTGCAGTGTTACGACACCACCTCCAGCACTGCTGTGTTTGTCATATAACACACCATTGTGGTGTTTGGGGGAACTGTCTCGATACAAATCCTGTTTGCAGTTCATAGATGTATCggtttctctcctcttcttttttttttttttttttcccttataagCAATTCCTTAAGAGACCCTGGAAACGTACAgggatttttcttttgtttacctttttatcatttcaatgtaaatatttgtttcaTTGTGTAAAGGAAAAAGAATAATTTGTTTTACCATGAGGTGTTGCGAGTGCATTTCAAGTTTGTGTTCAAATTTTACTAGAACGTAagatttttgctcattttggtTGCccttgtcattttctttttaagactGTTGACAAATGAATGTAATGTTTGCTCATGTTTTACTGCTATCTTCAGTGGATGGAACACCTTTGAGCCTTAACTCACTGTGGTATTGCTAAATGTAAGCATTATCTAGCTTATCCCCACATCAAATAATTAAAGCCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227790 lncRNA downstream 152475 7428587 ~ 7428883 (-) True G192437
TU227786 lncRNA downstream 180995 7400027 ~ 7400363 (-) False ipmkb
TU227735 lncRNA downstream 268471 7228390 ~ 7312887 (-) True G192385
TU227404 lncRNA downstream 765923 6813165 ~ 6815435 (-) True G192074
TU227405 lncRNA downstream 765923 6813548 ~ 6815435 (-) False G192074
TU227946 lncRNA upstream 46146 7629311 ~ 7630373 (-) True G192545
TU227929 lncRNA upstream 138840 7722005 ~ 7740008 (-) False ank3b
TU227921 lncRNA upstream 138840 7722005 ~ 7767502 (-) False ank3b
TU228003 lncRNA upstream 257198 7840363 ~ 7841460 (-) True G192583
TU228004 lncRNA upstream 258464 7841629 ~ 7841947 (-) True G192584
XM_026914557.2 mRNA downstream 1486 7574076 ~ 7579872 (-) True slc16a9b
XM_034309325.1 mRNA downstream 20608 7547063 ~ 7560750 (-) True fam13c
XM_026914632.2 mRNA downstream 138646 7435509 ~ 7442712 (-) False zgc:171971
XM_034309437.1 mRNA downstream 138646 7435509 ~ 7442712 (-) True zgc:171971
XM_026915835.2 mRNA downstream 153524 7421966 ~ 7427834 (-) True ube2d1b
XM_034309148.1 mRNA upstream 18053 7601218 ~ 7767512 (-) False ank3b
XM_034309143.1 mRNA upstream 18053 7601218 ~ 7739995 (-) False ank3b
XM_034309155.1 mRNA upstream 18053 7601218 ~ 7722757 (-) False ank3b
XM_034309161.1 mRNA upstream 18053 7601218 ~ 7703792 (-) False ank3b
XM_034309160.1 mRNA upstream 18053 7601218 ~ 7703792 (-) False ank3b
XR_004579320.1 other downstream 986968 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 1805338 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 1967404 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2107888 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2279153 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 875162 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 892094 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 1264497 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 1493624 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 1493953 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU226627 True 1525 lncRNA 0.33 1 CI01000047 1606843 ~ 1608367 (+)