RNA id: TU227946



Basic Information


Item Value
RNA id TU227946
length 1043
lncRNA type intronic
GC content 0.33
exon number 2
gene id G192545
representative True

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 7629311 ~ 7630373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ccaaggCTCTCTTTACTACAAACACCCTTTACTACTGTTGTACTACTAATCTTCATCAAGAAACGTCTAAAATACAGCAGTGTCTGTCCATCAGGGTGCAACCTATAGTAAGACATTTTCCTCTTAAATGTGCCCATTAATTATGTCAGGGAAAGGAGCAACTTCAACAAATCATGATTGCAAGGATGAACCGCTAGAGGGCCATAAAAGGATCAAAAAGAGGatactatacatacatatatacatatatatatatatataagcatataAGGTTTGTTGCTTTCTTGTTTCTGAACCCTCAAATCTGAGACTGTATTAAATCTATATTACTATTGTGTATTTACTTACATTCTTATATTCTACTTATATTCAACATATGTCTTTTTGTTGCCCCATTGTGAAGCCTAGGTAGAAGTACCCACATATGATAGATAAATGGTATTGAATTCATAGGCATACAATAGACATCTGTAATAAAGGCTTTTTCATTATTCAGAAGAGTGCCTTATTATTTGAACAATTTCTTCAACAAAGAGCGCCTCTAAACCACTGAACATTCCAGTTTCTCTCGTTTGCCTTcttagggctgtattcagagttggccaCTTAAGATTAAAAGTTACATATGTATTTACATGAGGAAAGttactcgtattcagagtcgggttatgcAGCTCAAATTGTTGTCGAATTTTTGGACAGCTCattcaaatgattaaaattaccTGCATATAGTTCAGGacctgaggttgccagatttgtcttcagtagaagcattttaaaaaattttttttgttttcaataGTGTCTACAGACTTTTAACACAatcacttgcctttaagcccaCACAAAAAAGAGGAGTGAAGAAGGaactggtgtttttttctttgctgtcaaatggaATGTTATgtcttaaaatgtttaaaaatgtttacaatttaaaaatgaaaaataaaacagactatgatgatatactgtatgaatgagaagatggcaagcttttaaataaacatctaatcaCATTAATTGGGTTCATGTCTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU227943 lncRNA downstream 46146 7581358 ~ 7583165 (-) False ccdc6b
TU227790 lncRNA downstream 200428 7428587 ~ 7428883 (-) True G192437
TU227786 lncRNA downstream 228948 7400027 ~ 7400363 (-) False ipmkb
TU227735 lncRNA downstream 316424 7228390 ~ 7312887 (-) True G192385
TU227404 lncRNA downstream 813876 6813165 ~ 6815435 (-) True G192074
TU227929 lncRNA upstream 91632 7722005 ~ 7740008 (-) False ank3b
TU227921 lncRNA upstream 91632 7722005 ~ 7767502 (-) False ank3b
TU228003 lncRNA upstream 209990 7840363 ~ 7841460 (-) True G192583
TU228004 lncRNA upstream 211256 7841629 ~ 7841947 (-) True G192584
TU228005 lncRNA upstream 211687 7842060 ~ 7842634 (-) True G192585
XM_026914606.2 mRNA downstream 33430 7581350 ~ 7595881 (-) True ccdc6b
XM_026914557.2 mRNA downstream 49439 7574076 ~ 7579872 (-) True slc16a9b
XM_034309325.1 mRNA downstream 68561 7547063 ~ 7560750 (-) True fam13c
XM_026914632.2 mRNA downstream 186599 7435509 ~ 7442712 (-) False zgc:171971
XM_034309437.1 mRNA downstream 186599 7435509 ~ 7442712 (-) True zgc:171971
XM_026914587.2 mRNA upstream 174147 7804520 ~ 7809766 (-) True tmem26b
XM_034309107.1 mRNA upstream 349183 7979556 ~ 7990069 (-) False egr2b
XM_026915476.2 mRNA upstream 349690 7980063 ~ 7982977 (-) True egr2b
XM_026915091.2 mRNA upstream 391161 8021534 ~ 8141060 (-) False jmjd1cb
XM_026915090.2 mRNA upstream 391161 8021534 ~ 8141060 (-) False jmjd1cb
XR_004579320.1 other downstream 1034921 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 1853291 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2015357 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2155841 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2327106 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 827954 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 844886 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 1217289 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 1446416 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 1446745 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile