RNA id: TU228135


Basic Information

Item Value
RNA id TU228135
length 1494
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G192681
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8090685 ~ 8095357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagaggagaacagagaacaGTGGTAAAAGTTAAACCGTGCTCTTAGTGGCTTGTTGCTGAGGCTGTGTGCAGTTTTGATTATGTAACGGTGTGTAGTACAGCGCCATCTGGCCCAGGCACAGAAGATAAgagtacaaaacaaaacaccgactacacacgcacacacatatactaacactaatactaatacCCTGTAAACCCATTGTGTAGGCACAGATATTTTTGTCCTGTTGATCAGAAATTTGTAATAAAGAAATTTCTAAAGTGTTTAATGCTCTGCCTGTTGTAATATCTGGCAGcgtttctctttaaaacagcCACATCATTGTTAGTAATGTTTCCACAAATACACCATTTAAGTGGAGAGAGATAACCTTATCTATCGTGAAAGGTAACTATCTGGTGGACAGAGagccagactttttttttttatcacactCCAGCAAAATGAGTGTTATCAATATCTAATTATTCTATCAGTGGGAAATTGTAATGACAGTAGTTTCAAGCAGGCATCTGATTCTCATTCTGGTGGTTGTAGACTTGATGAATGGAGAAATAACTTAATAATGAGAACACAGAGATAAAGGTCATACACTATCAGGCAAAAGTGTGCACTAACagtacatacaatatatatatttttcattgtcttTCAATGTAAATTGTGATGTATAAATTTCTTTCCAATTCAAAATGGATTTTAAGATGTagtttttacataaaattaagTCAGCCGTTCTTAGCCAGTGACCCCAATTTAAAGGTCCAAAATTTTCATGTAGTATTTTCAcatcataaacacaaaatatcGCTGTGTACTATCACATAAAGTTTCTAGCGTTCATGATGATTTTGCGATGTTCACACTGGTTATCATCATCATAGTTTCCTGCATATTCGTATCATTTAAATCCTTCTTGTGTGGAACACCTTGGAAAACGTGTTCATACCACTGTTTCTACAACCACAAGCAAAGACACAAACAgcacaactgtcaatcaaacacaaacatgcacgtGATATTTGGATCAGTTGAAGAAAATCTCAGAAGGAAAGAACGTGTGTTAAAGTGGGTTTGTTTGGAAGTCTGTTCTTGCTGCACTGTACAACCTCAAACCACCTTATGCTCAAAGACATGTGTCTCTGGAGTCCACTGACTTCCACTGTTACAGCTTTATAAAGTTTCATTCAGTCATCATACCGTATTTCCCTAATTACCTCAGTCGACTCCTGACGAAACAGTAATTACCCAGCGCTCGCACATTCGGCCAACGTGTGGCCTTAGGGAAACTAtagttttctctttctctctccttcacatTTTCATTGCTGCTCTCTGTCATATGTGTTGCTTCTTTCCTCCTAAgtttctcttttatttgttttgtctctCACTGTCCCTCCCTCTGTATCCCTTACACAACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228096 lncRNA downstream 113531 7974214 ~ 7977154 (-) True G192665
TU228097 lncRNA downstream 113620 7974214 ~ 7977065 (-) False G192665
TU228034 lncRNA downstream 212986 7874766 ~ 7877699 (-) True G192611
TU228005 lncRNA downstream 248051 7842060 ~ 7842634 (-) True G192585
TU228004 lncRNA downstream 248738 7841629 ~ 7841947 (-) True G192584
TU228380 lncRNA upstream 283870 8379227 ~ 8383599 (-) True G192881
TU228447 lncRNA upstream 333947 8429304 ~ 8436084 (-) True G192937
TU228459 lncRNA upstream 356840 8452197 ~ 8455303 (-) True G192948
TU228456 lncRNA upstream 368952 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA upstream 385063 8480420 ~ 8513470 (-) True G192953
XM_026915093.2 mRNA downstream 26681 8021534 ~ 8064004 (-) False jmjd1cb
XM_034309107.1 mRNA downstream 100616 7979556 ~ 7990069 (-) False egr2b
XM_026915476.2 mRNA downstream 107708 7980063 ~ 7982977 (-) True egr2b
XM_026914587.2 mRNA downstream 280919 7804520 ~ 7809766 (-) True tmem26b
XM_034309163.1 mRNA downstream 455245 7601218 ~ 7635440 (-) False ank3b
XM_026915599.2 mRNA upstream 102727 8198084 ~ 8201220 (-) True LOC113527613
XM_026915598.2 mRNA upstream 102730 8198087 ~ 8201212 (-) False LOC113527613
XM_026915591.2 mRNA upstream 112587 8207944 ~ 8261110 (-) False exoc6
XM_026915590.2 mRNA upstream 112587 8207944 ~ 8261110 (-) False exoc6
XM_026915597.2 mRNA upstream 112587 8207944 ~ 8259602 (-) False exoc6
XR_004579320.1 other downstream 1496295 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 2314665 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2476731 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2617215 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 2788480 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 362970 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 379902 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 752305 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 981432 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 981761 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile