RNA id: TU228380


Basic Information

Item Value
RNA id TU228380
length 3222
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G192881
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8379227 ~ 8383599 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcagccATAAATCAAGCCACAGAGAAGATAAGCACAATGGGTTAGGGAGTTTGCAGGGGCTGCAACCACAGAGATTAGAGTAAGTAATCAGCTGAGAGGAGGAATAGGAAGCCACGCCTTCACTTCGCTGTGTTAGTCAGTGTGTTAGGGAGAGAAGCACAATCACCTTACACACTACAGCCAAGATTTGACTCTGGCACGTACTGCTGTGTGAGGAAAGTATATGATGCCCAAGGACTCAACAATATTTGAAaactttgattttattacagttatagCCACAACTGGAGGTGAATTCAGccatttaaataatcaaattaagagttttaatgtgtgtgttctttaaaTCACTGACTGTTTATACTTCTGACAGTGCTGCTTGTTATTCATGCCAGTGTGTTAGAAAGTTCAGTGTCATGATTACTACTGCGGTTCTGAATTGCCCAATTGTGGCTTTAACGAAACAGCTACAAAGCAATGCCGCTTTCTGACTTCGAACTGACAAAGCTGGAGTAATTCACAAAAGCTAAATACTGTCCCCCTGCCAAGTCAAGGCAACCTGCCTTGAAAGTTTTCACTGATAAACAGTTCATGCTTGTGAAGACTAGAATGATTTGCCTTCGTGCTGACACAGAGGCATGATGTTACTGAGAGACTGCACACTACAAAACAGACAAAGGCACAGTATTTGAAACAGGGTTAGAAGGGGTTAGGGAAACAGATAATGCCCAGGGATCTTGCAACTGGATACAGGCAGGGATTTTGTAAGAAGCTGAAAATCCCGTCATAATGACCTGGAGACACTGCAGCCAAATAGAGAATAGAAAGAATCTTCCTCGCGATAAACCAGGCTGCTGAAAGAACGTTCTGGCCCGCCTTTAACACACTCCTGCCTGGACACCATCAACGGGGGGAAAGCAAAGTTATTTACACATTACTGATTGCAGTAACAGTTTTAGTCCCAATACACAGTATTAACGGTTACTGAGCACATGAAGCAAAACTGGAACAGACTATAAAGCAAGTTAAGAACCAGCGAGTACAAAACCTGTGAATGCTACAAGGACCCACAGAGCCTCTACTAGCCACGGGGCTCTGGAAGACCCTGTGGAGACTGTGACGGTCCTCGAAGTCTGTTTCTCTTTGCAGTCGTCACCTGTTGGGATTCAACATGTACGGCAAAAAGATTAAATCATGCATGTAAAgtagattaaataaatcaagTAAACCATTGTAAATGTAACAGCCAGAAGCAAACCAATTTGTGATCTGCCATAAATAAATGGAACAGATACGTATGTCTTTGTGAACAAATGCAAAGTCTGCTTAAGTTCTGCTGCCATGTGTTTTGGTGAATCATGCGGGTTTTGTTTGCTGTGCACGAGGACATGACTCATCTCCTGTTGAGCATTACACCGGCAAACTGACCAACACACCTACAACGGTTCCTATACCACAGGTAGTGGAATAAATACGTTTCTGGAAACAACGAACTAAAAGCCGACCTCAAGTTTTCAGAAAGCAGTTTTCTATGCAGTGTGTAGGATCTAACGTAATCCATTCAAACTTGCAGAGAATGTACCTATGGTAAGTCTTCTTtgtaggatgtgtgtgtgtgtgagaaagagtgagaagtGTAATGTAGAGCCGTACTTACACAGAGGGCCATTAAGAGTGTGCGGGTCCTTTTGAGTCAccttttcatttacattcatggtTCCACAGTAACTAGCATGACCTACAGAAAACcagcacaacaaaacaaaaaaatcattctatTCCCTCAGTTCCGCCTGCAGTCTTTGCCTTTCTCCCTCTGATCAGAGCCCAGGATGTGCAGGGGTGGATGCAGACAGGCAGGATTTGCATGTAACCAAGGTAATGCCCACAGGAGAGAGAGCCATTTGTTTATGTGCAATACGTTGAGCTCAGCTCTTCTGCCGGAAGGGTTAAATTGTGTTGGACGTAGTGAAGAAGTGGCTGATGGGTGAAAAGTGCAGATGTCAGGACTTGAAGTGGTGTGAGAAGAtaatacaaaatgaaagaatttgAATCAGCACTTTGTGCAAATCATTCTGTGACATTGAGGCCAGCTTAATATCAACACCAGAAATGAAAGACAGGTGACGATAGGTGACGATAGGTGACACGACAGACAAGCACCGGAGATGTTGTTCAGATtagaaaatgacataaattaGCAAGAACAGCAGGAGCTCCAGTTgggaagaaggagaaaaaaataaataaataaattcagaacACAGTACTGATTCAGTGCTCAACCTATCCAAGAAAACTTTTAGGACTGGGGTGTTGTCATTCATACGAAGAATTAAAGTGGTTAGAGACAGCAGTGCTCAAGCCTCCATTATTACCTCCGTTAGCACTGCCACTGCTGGTCTTCCTCAGCCCAATATACTGAGCCGGCAGTGTGAGGGCTGCAGCTGAGGAGGCACCTGCAAACCGTTGTTTACACTCGCTGTCATGGTTACATTTCAACCTACTTACACACTATCAGACGCTTTCATTTGAAAAAACGTGGGTGCCGATATGAAATTAACACACACGTCCCTAATCTGGCCATTAAAAATCCAACAGCCATAGGAGAGAAGATAAAACAAGGTGAAAAGTTTAGAGATAACACCATGCATCAGTTAAGAAGCTCCAGTGAAAAGAAACAGGTAGccagctatttaaaaaaaaaaaaaaaaaagaccagagaCTGTATTGGTAAAAACAGGAAAACTGCAGACGGAGCAGGAATTGAGTTCAGGGGCAGATGGAAGGCTGGTACCTTTGCCTAGTTGGCAGGTCTTGAGAACGCTCTGCATGAGTAtggtaaatacacacactacagaggcACACACTCTCCTGCTGTGATACAGGAAGGCCTCTGAGACCACTCCAAGCACCGGCTCTGTGTCGGCGGCTCCTCTCTCGGCTGTACACTGTAGTGTGGGGAGAGGAGAAGGATGTGCTTGCAGCTGAGGTGGCTCCATCCACTGCGGTGCCATGCAGAGCGGCTGAGGAGTaagaacaggaggaggaggagcaggttTTGGAGGAGGTGTAGGCTTGGAGAGCATCTCTCCTGTCAGAGTGGCTGGCCACGCAGTTATTGCAGATGTAGCCGCCGTGTAGGGTGGAGGTTTGAGTCTGAGCCACATGCGTGCCGCTGTTGTTGAGAGAGAAGCTGTGGTCTGCGTGGAGAGTCTGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228139 lncRNA downstream 252670 8071922 ~ 8126557 (-) True G192685
TU228135 lncRNA downstream 283870 8090685 ~ 8095357 (-) True G192681
TU228096 lncRNA downstream 402073 7974214 ~ 7977154 (-) True G192665
TU228097 lncRNA downstream 402162 7974214 ~ 7977065 (-) False G192665
TU228034 lncRNA downstream 501528 7874766 ~ 7877699 (-) True G192611
TU228447 lncRNA upstream 45705 8429304 ~ 8436084 (-) True G192937
TU228459 lncRNA upstream 68598 8452197 ~ 8455303 (-) True G192948
TU228456 lncRNA upstream 80710 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA upstream 96821 8480420 ~ 8513470 (-) True G192953
TU228466 lncRNA upstream 100009 8483608 ~ 8485178 (-) True G192954
XM_026914925.2 mRNA downstream 76808 8301334 ~ 8302419 (-) True LOC113527290
XM_026914611.2 mRNA downstream 96365 8269591 ~ 8282862 (-) True adam8b
XM_026915591.2 mRNA downstream 118117 8207944 ~ 8261110 (-) False exoc6
XM_026915590.2 mRNA downstream 118117 8207944 ~ 8261110 (-) False exoc6
XM_026915594.2 mRNA downstream 118117 8209345 ~ 8261110 (-) False exoc6
XM_026915273.2 mRNA upstream 56588 8440187 ~ 8445679 (-) True crym
XM_026915448.2 mRNA upstream 64328 8447927 ~ 8450462 (-) True snu13b
XM_026914607.2 mRNA upstream 130962 8514561 ~ 8521374 (-) True si:ch1073-272o11.3
XM_026914608.2 mRNA upstream 130962 8514561 ~ 8519798 (-) False si:ch1073-272o11.3
XM_026915557.2 mRNA upstream 291130 8674729 ~ 8678396 (-) True wfikkn2b
XR_004579320.1 other downstream 1784837 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 2603207 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 2765273 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 2905757 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 3077022 5302113 ~ 5302205 (-) True trnai-uau_5
trnap-agg_9 other upstream 74728 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 91660 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 464063 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 693190 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 693519 9077118 ~ 9077199 (-) True trnal-uag_4

Expression Profile