RNA id: TU228680


Basic Information

Item Value
RNA id TU228680
length 668
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G193138
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 8927981 ~ 8928648 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGGCTCGGCTCCGAGCGCGCGGATGTCCGGGTGAAGCCTCAGGAACTCGAGCAGCGCGCGCGTGCCGCCTTTCTTCACGCCGATGATGAGCGCGTGCGGCAGCCTGCGCGCGCCCCTCCAGTCCTTCTCCTTCATCGAGCCCTCCGCATCCGCGCCGTCTCCCGcgttcctcttcctcctcttcctcccgtCTGCTCCGACACTAACCGTCCCGTTCCTCTCACCGTAGCGTCCCGTTCCGAGCGGCGCCTCGTCGCGGCTTAAGCTGAAACTTTCCGTCACTTCAGATTCGCAGCATCGCAGAAAGTAGAGGAGGAAAGCGCACGCCACACCGAACCACAGCATGGCTACAAGTTTGCGCGCGAGTCTCCAAGGGTCCGGCGGAGGTGCGCGAGAACTTGCCATCCCTCTGAAGGGAGACTGAAGGACGCCATTGTGTTCAAGAAGTTACTGGTTTAACTTTAAAGCACCGTGAAAGTGAACGCCACCGAAAAGAGCCGAGTGTCTCCGGATCCATGTCTGACAGCCGCTACCTCAGCGCGTCAACGCTCGCGCGCGAAAAAAAAGAGCgtggaaaaaaaaccagaataaaatcaaacagaatacattacaataaataaaaatacagcgcTCGTGCTGAGTGAtctttgtttctgtctttctcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228456 lncRNA downstream 386700 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA downstream 414511 8480420 ~ 8513470 (-) True G192953
TU228466 lncRNA downstream 442803 8483608 ~ 8485178 (-) True G192954
TU228459 lncRNA downstream 472678 8452197 ~ 8455303 (-) True G192948
TU228447 lncRNA downstream 491897 8429304 ~ 8436084 (-) True G192937
TU228880 lncRNA upstream 225794 9154442 ~ 9156287 (-) True G193315
TU228886 lncRNA upstream 229543 9158191 ~ 9158569 (-) True G193319
TU228882 lncRNA upstream 230786 9159434 ~ 9184089 (-) True G193316
TU228901 lncRNA upstream 273344 9201992 ~ 9202672 (-) True G193334
TU228925 lncRNA upstream 343769 9272417 ~ 9272654 (-) True G193355
XM_026915497.2 mRNA downstream 29920 8859204 ~ 8898061 (-) False mprip
XM_026915499.2 mRNA downstream 29920 8859204 ~ 8898061 (-) False mprip
XM_026915496.2 mRNA downstream 29920 8859204 ~ 8898061 (-) False mprip
XM_026915501.2 mRNA downstream 29920 8859204 ~ 8898061 (-) False mprip
XM_026915495.2 mRNA downstream 29920 8859204 ~ 8898061 (-) False mprip
XM_034309637.1 mRNA upstream 12264 8940912 ~ 8956325 (-) True LOC113527765
XM_026915717.2 mRNA upstream 97377 9026025 ~ 9027306 (-) True rcvrnb
XM_026914686.2 mRNA upstream 164493 9093141 ~ 9132326 (-) True LOC113527142
XM_026915297.2 mRNA upstream 233576 9162224 ~ 9251115 (-) False myocd
XM_026915295.2 mRNA upstream 233576 9162224 ~ 9251115 (-) False myocd
XR_004579166.1 other downstream 70233 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnal-uag_3 other downstream 452641 8475259 ~ 8475340 (-) True trnal-uag_3
trnap-agg_9 other downstream 469585 8458327 ~ 8458396 (-) True trnap-agg_9
XR_004579320.1 other downstream 2333591 6548071 ~ 6594390 (-) False itga3b
TU226699 other downstream 3151961 5768528 ~ 5776020 (-) False LOC113527291
trnaa-ugc_6 other upstream 148141 9076789 ~ 9076860 (-) True trnaa-ugc_6
trnal-uag_4 other upstream 148470 9077118 ~ 9077199 (-) True trnal-uag_4
trnaf-aaa other upstream 148918 9077566 ~ 9077647 (-) True trnaf-aaa
trnaa-cgc_2 other upstream 150338 9078986 ~ 9079057 (-) True trnaa-cgc_2
trnaa-cgc_3 other upstream 152362 9081010 ~ 9081081 (-) True trnaa-cgc_3

Expression Profile