RNA id: TU228880


Basic Information

Item Value
RNA id TU228880
length 1824
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G193315
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9154442 ~ 9156287 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAATTCATAGGATTTATTCTAGCATTCAGTCCATTTGTTTTCCAGaccttacagaaaaaaatagctCGATAAGGTCACAATCACATCCTAGCCTTATCACAACTGACCTGCAGGCAGATACTTAGCTCTCATCATTACTACAAGAACACTAAGGTTTCATCAATATCCTTTAAATATGTGAAGTGAAGAAGACAAATAGCTCAGACCATCAGAGGTTAATATCTCCAAAAGCAGACATAAGGCAATATCCCTGCATATCCtctaattacatattttttttttttttttttaaacagattgcTGTTCACAATGTATACACTTAAAATCTTTTCACAGTGTGAACAATTCTTGAAGATATTTCCCACTCTTTATACCGATACAATATAACGTTACATAAAATCCATATTTTCCcttctaaatattaaatattctacTATGGTGCCATTTTGTACAGTTGAAAGATTGTTTTCAAAATTGGGATTTTCTTTATTAAGGTATGCTCATAAAAAGGATGTATAGTTAAGCATTCTTAGGTCAGTGATGCATCTTAAGTGTGTCAGATGATCTctattttacacaaacacacaaaaatgaattcTTTCTACCAAGTCTTTCAATGCTATCTAGTGTCATATTTCAGTTGCCCTATTATGTCAGTTAGTAAAAGACTGCTTTGGCAAAGTGttgtacatttcttttaaagtgAGTAACCTAAACAGTGATATTTGAACATCTTTCAGAATGCACACATAAGCCAAGATGTCAGAGCCAATTTCAGGAGAAGTGGCAAAATATAAAGTAGCATTAAGGATTTTGGGACGTGTACCgtaacttttacatttacagtaagaTAGGAGTGTCTGCAAGTGTGTACACTATACCAgcaagaggttttttttttttttaattcattcaataCAATTTGGTGAGTTAAAGTTGCATATTTATAGAAAACTACTTTAAggatgactttttttgttttgttttgttttttaatctttcaacCGACCAACTGATCTGTCAAATGGTACCAGACTAAGTGTCATCTGTGTCTTTTCCACAAAGTTAACATGTCACAAATCTTTCAGATGAAATGTTGGAATTTCACAAAGACTGCTATGTGTGGAGCGAAACGTGTAGAAGAAATGATccaaccactttttttttaacggaTTCTTTGACGAACAACAATACTTCTGCATACTCTTTCGGAAAGTGAGACCACAATTAAACTGTGCTTTACACCTACAGATATTGCTCTAAATGACACGTCCTATCATAGAAATGTTATACGGTATACAACATGGTAGGCGTTTTCTTTCTATTTGAATAGCAATGACTTCTTGTTTCAGCAAtttcttgttcttgttgtttGTATCATCACTTTCAAGTAGATATTTACGTTCCCGTGAACATGAAGTGTGTCTTGAATGAAGGAGTTCAAGTCTTGTTCTAATTTTCTATAATGCGCTCAGCTAAACATTTACATGtggcattaaaataaatatcacacctcaaataaaattattattgttcttattcttcttattgTTCTATCTTGTTTTATAGACCAATACACTAATGGTTTTGAAGATGAAAAGCCGATCCTTATTGCACACAATGTTTTGGGAGTGCCGATCCTTAAAAGCAGTGTGGAACCGCCAAACGGCTGCCGTGTTACATTGCATTCGGGTAACGTACACGCTATCAGTCGACGTACATGGGAGAGCTGGGGGAGGCGGGGATTTCATCCAGAATTTTACACACGTAACCGGCAACGTCCACCACTCTCTCCTCGTACATCAGAATGAACGGGTGCTTct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228680 lncRNA downstream 225794 8927981 ~ 8928648 (-) True G193138
TU228456 lncRNA downstream 613161 8464309 ~ 8541281 (-) True G192945
TU228465 lncRNA downstream 640972 8480420 ~ 8513470 (-) True G192953
TU228466 lncRNA downstream 669264 8483608 ~ 8485178 (-) True G192954
TU228459 lncRNA downstream 699139 8452197 ~ 8455303 (-) True G192948
TU228886 lncRNA upstream 1904 9158191 ~ 9158569 (-) True G193319
TU228882 lncRNA upstream 3147 9159434 ~ 9184089 (-) True G193316
TU228901 lncRNA upstream 45705 9201992 ~ 9202672 (-) True G193334
TU228925 lncRNA upstream 116130 9272417 ~ 9272654 (-) True G193355
TU228926 lncRNA upstream 117791 9274078 ~ 9274290 (-) True G193356
XM_026914686.2 mRNA downstream 22116 9093141 ~ 9132326 (-) True LOC113527142
XM_026915717.2 mRNA downstream 127136 9026025 ~ 9027306 (-) True rcvrnb
XM_034309637.1 mRNA downstream 198117 8940912 ~ 8956325 (-) True LOC113527765
XM_026915496.2 mRNA downstream 256381 8859204 ~ 8898061 (-) False mprip
XM_026915297.2 mRNA upstream 5937 9162224 ~ 9251115 (-) False myocd
XM_026915295.2 mRNA upstream 5937 9162224 ~ 9251115 (-) False myocd
XM_026915296.2 mRNA upstream 5937 9162224 ~ 9251115 (-) False myocd
XM_026915294.2 mRNA upstream 5937 9162224 ~ 9251115 (-) False myocd
XM_026915293.2 mRNA upstream 5937 9162224 ~ 9251115 (-) False myocd
trnal-aag_5 other downstream 70632 9083729 ~ 9083810 (-) True trnal-aag_5
trnal-aag_4 other downstream 71502 9082859 ~ 9082940 (-) True trnal-aag_4
trnal-uag_6 other downstream 72436 9081925 ~ 9082006 (-) True trnal-uag_6
trnal-uag_5 other downstream 73185 9081176 ~ 9081257 (-) True trnal-uag_5
trnaa-cgc_3 other downstream 73361 9081010 ~ 9081081 (-) True trnaa-cgc_3
trnam-cau_28 other upstream 359527 9515814 ~ 9515885 (-) True trnam-cau_28
trnar-ucg_9 other upstream 359785 9516072 ~ 9516144 (-) True trnar-ucg_9
trnal-aag_7 other upstream 434088 9590375 ~ 9590456 (-) True trnal-aag_7
TU229103 other upstream 434274 9590561 ~ 9592538 (-) True LOC113527760
TU229102 other upstream 435017 9591304 ~ 9592538 (-) False LOC113527760

Expression Profile