RNA id: TU228978


Basic Information

Item Value
RNA id TU228978
length 614
lncRNA type sense_over
GC content 0.58
exon number 2
gene id LOC113527700
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9368217 ~ 9419487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCCGTGACGTCAGCAGCGCTCTTAATGATGCAAGGCAGAAGGGCGCGAGGCTGCTGACACCCCGCTCACTCAGCGCTCCGCCAGCGGCCGCGCACCCAGCAAGCACCGCGCCACGCGCAGAGCAAGATGAAAAGCAGGAGGTAAAGCTCGCTGGCTCAGAGCTCTCGCTCAGGGCGCCGACTGGAAACGCTGCAAGAGCGATGTGTGTTCATCCCTGTGACTGGCACGTCTCCTCTCTGTCCATCAAAAGCACCCGATTCCAATTACACTAATGGCGCTGTCCACGTAGCCTGTAATGTTCTTAGGAGACTCTTAGCAGAGATGCAGAGAAGCGGAGGAAACTGGAACTTTAGGACCGTGTAGGACACAAGAAAGCAAATCATCAGCAGGaaaaaaggtgaaataaaacaaccaaacaaaaaagGAGGCTAGAACGAGCCATGGGCCATCCTGCTCCTTGGGCCATCCTGCTCCTTTTGATTTATCTGGACCCCTTGAGTGTGCTGTGCACGTCGACAGCAAAGCGCACGAAAGTGGCACCGCGGCGGACCGCCAAGCCCAAGGAGCTGAACGGCACCGCGCACTCCCCCGCGCCCGCGCCCGCACCCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229003 lncRNA downstream 9326 9408413 ~ 9408673 (-) True G193433
TU229002 lncRNA downstream 9654 9408082 ~ 9408345 (-) True G193432
TU229001 lncRNA downstream 10124 9407674 ~ 9407875 (-) True G193431
TU228980 lncRNA downstream 35657 9381732 ~ 9382342 (-) True G193410
TU228982 lncRNA downstream 43809 9373926 ~ 9374190 (-) True G193412
TU229023 lncRNA upstream 55854 9475084 ~ 9475984 (-) True G193447
TU229029 lncRNA upstream 90503 9509733 ~ 9509939 (-) True G193453
TU229056 lncRNA upstream 114499 9533729 ~ 9534024 (-) True G193474
TU229058 lncRNA upstream 116229 9535459 ~ 9536612 (-) True G193476
TU229104 lncRNA upstream 168721 9587951 ~ 9588686 (-) False LOC113527759
XM_026915294.2 mRNA downstream 166884 9162224 ~ 9251115 (-) False myocd
XM_034309436.1 mRNA upstream 62320 9481550 ~ 9499180 (-) False foxk2
XM_034309435.1 mRNA upstream 62320 9481550 ~ 9499180 (-) True foxk2
XM_026915915.2 mRNA upstream 81030 9500260 ~ 9509293 (-) True wdr45b
XM_026915580.2 mRNA upstream 97979 9517209 ~ 9520812 (-) True si:ch1073-357b18.4
XM_034309627.1 mRNA upstream 167936 9587166 ~ 9590116 (-) True LOC113527759
trnal-aag_5 other downstream 334189 9083729 ~ 9083810 (-) True trnal-aag_5
trnal-aag_4 other downstream 335059 9082859 ~ 9082940 (-) True trnal-aag_4
trnal-uag_6 other downstream 335993 9081925 ~ 9082006 (-) True trnal-uag_6
trnal-uag_5 other downstream 336742 9081176 ~ 9081257 (-) True trnal-uag_5
trnaa-cgc_3 other downstream 336918 9081010 ~ 9081081 (-) True trnaa-cgc_3
trnam-cau_28 other upstream 96584 9515814 ~ 9515885 (-) True trnam-cau_28
trnar-ucg_9 other upstream 96842 9516072 ~ 9516144 (-) True trnar-ucg_9
trnal-aag_7 other upstream 171145 9590375 ~ 9590456 (-) True trnal-aag_7
TU229103 other upstream 171331 9590561 ~ 9592538 (-) True LOC113527760
TU229102 other upstream 172074 9591304 ~ 9592538 (-) False LOC113527760

Expression Profile