RNA id: XM_026915771.2


Basic Information

Item Value
RNA id XM_026915771.2
length 3492
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC113527700
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9368217 ~ 9419487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagggaaggagagagggagacaggggGAGTgacagggagaaagacagagagccAGAAGGAGTGGGGGTGAGGAAGAAAAGACAAAGGCTGCATTTGTTTAAACAATGGATTAACTAATGTCATTACGCGTCTGTGAATATTTTCATGGCGCAGATGAGAAGTAAGTCAGCGCGCAGAGACGCAGAAGGACGGGCGACGTGCTCTGCACTGAGACTGACATGTTTGCGCGAGAGCAGCGGCAGCAACAGCGCTCGGAGCCGTGACGTCAGCAGCGCTCTTAATGATGCAAGGCAGAAGGGCGCGAGGCTGCTGACACCCCGCTCACTCAGCGCTCCGCCAGCGGCCGCGCACCCAGCAAGCACCGCGCCACGCGCAGAGCAAGATGAAAAGCAGGAGGTAAAGCTCGCTGGCTCAGAGCTCTCGCTCAGGGCGCCGACTGGAAACGCTGCAAGAGCGATGTGTGTTCATCCCTGTGACTGGCACGTCTCCTCTCTGTCCATCAAAAGCACCCGATTCCAATTACACTAATGGCGCTGTCCACGTAGCCTGTAATGTTCTTAGGAGACTCTTAGCAGAGATGCAGAGAAGCGGAGGAAACTGGAACTTTAGGACCGTGTAGGACACAAGAAAGCAAATCATCAGCAGGaaaaaaggtgaaataaaacaaccaaacaaaaaagGAGGCTAGAACGAGCCATGGGCCATCCTGCTCCTTGGGCCATCCTGCTCCTTTTGATTTATCTGGACCCCTTGAGTGTGCTGTGCACGTCGACAGCAAAGCGCACGAAAGTGGCACCGCGGCGGACCGCCAAGCCCAAGGAGCTGAACGGCACCGCGCACTCCCCCGCGCCCGCGCCCGCACCCGCGCCCGTTCCCGCTGCGGGTCAGAACCACGACACGTGCCTGGGCTACTACGACGTGAGCGGCCAGTTCGACCGCGAATTCGAGTGCAACAACACGGACCACCGCTACTGCTGCGGCTCCTGCTACCTGCGCTTCTGCTGCCAGTTCCGGGGCAACCGGCTGGACCAGCGCACGTGCAAGAACTACAACAAGCCCGACTGGGTGAAAACCGCGGCACCGTCACCTGCCCCGACCAGCGAGCCGTACGACCCGAGCGCCGACCAGACCAACACGGCAGTGTACATCACGTGTGGCGTCATAGCCTTCGTCATCGCGCTCGGCGTGTCGGCAAAGGTCGCCTACGACAAGGCCACGAGGCCGCCTCAGGAAATGAACATACACAGAGCCCTAGCAGATATTTTGAGGCAGCAAGGACCCATTCCCATATCCCAATATGACTGTGAAAACTTTGCGGCAATGAACAGCTCATCCAAAGACGACACTCCACAGCGGACAGGCTCCAAAAACCACTACACCCCTGTTCACACATCCAAATCCAATCATGGTGGACACTATTCGAAGGAGAGCGGCCGTGGCGGAGGGCACGACCTTCACAACTTCATCTCGTCTGGCTTCGTGACTCTGGGGAGAGGCCATGCAAAAGGAGAAAGGCAGTGGCCGATGCGGTCTCAGAGTCACCATGGCACGCATCAACACAACTACAACCATGTGGGTCTCAGTAGTCCTACTCGAACTCCTAAAAATGAGAGCACGCGCATGAACAGCATCCTCACATCGCAGACGGAGCCATACGATCTGTCCTTCTCCCGCTCCTTCCAGAGCCTCTCGCACCTGCCTCCATCCTACGAATCCGCCATGAAGGCTGACCTCAACAAGTACTCCTCGCTCAAAAGACTGACCGACAAGGATGTGGACGACTACTACAACCGAAAGAGGCACCTTCCTGACCTGGCAGCACGCGGCACCCTCCCACTACACATGATCAAGATGAGCCAGGATTCTCAGAGTAGCCAACAGGctcaacagcagcagcagcagcagcagcagtcgtCACGCCAACGTCCTCGCCGTGTACAGAGAGCCATGTCTCAGGACCGCGTGCTGTCTCCAGAGCGTGGCTATGCTCAGGACTATGCCGTGTCTGCCTACCCCACATCCCCATACGGCGAGCGCATCCTATCTGATGAGCAGCTGCTGTCGGCTGAGCGCCTCCGCTCACACGAGCGCCTCATCTCCCAGGACCGGCTGCATTCACAGGACCGCCGCTACTCACAGGAGCGTGTCCACTCACACGAGCGTCTGCACTCTCACGAACGCATGCACTCGCAAGAGCGCCTCTACTCCCAGGACAGGCTACGCTCGCAAGACCCGCTGCTCTCTCCTGATAAGACGATGTTATCCAAACGTGGCAGCTTTCACGGTGACAAGTCCATGTCCAGAGCCATATCGCACACGGACGTGTTTGTGCCCACCACGCCGCTCTTGGACCGTTACAAGATGACCAAAATGCACTCGCATCCCAGTGCCTCAAACAACAGCGGCACTGCTGCAGTGCACAACACGCTGACCAAGAGCCAAACCACCTCCAAGAGACAGGCGTTTGCCTCACGCCGCACGCAGACCGTGGAGCAGCTGCACTATGTCCCGCAGGCGGCtcagcagcagcatcaccaCCACTACCGTACAGGCAGTAAGACCGAAGTGACTGTTTAACTCTAATAATTTCAATCGGACCTCAGCCATCCACCAGGAACTTATACACAGAAAGGTCTGACAACCAGTCCTcgtctacactatactctattcCACATATACTCTGTACTGAGACAAGAGACCCTTCTGTGTGCATACCcatcatttttgtgtgtttgtagatcACAGATAAAGGATGGACTAGAAGATTGTGCAGCTTGTCAGAAACCATCCATCCAGTTCTGCAGTTCTTAAGGgctttgcagaaaaaaaaaacatgcagagacTCTTTTAGCAGAACGACAGAAGGTGTAAATGAAAGCGCTAGTTGGTGCGAATGTGTAATGGaattatataactttataaatatataagtatacaTACTGTTTGTACTTAAAGTCCTAGTCATAGCTTTAGAAGTTCTTAAATTAAACTGATGTTAGCACTTCTATTGGTGCCTCTATAAAACTGTTCCATTTCATCAACGAAGTGGTTTTGTgggttaaaaagcacaattgattaaaaacattttttctaatttttgttttgtttagctGTTTTGTTTGACTGAtttgttttgctcatttttttgaTTGACAATGGCAAGTTCCTTTGCGTAGATGATTGTAAATAAGCTGTTTTAGCCGCAGTAATTGGAGAAGTCTGTTCTGGTTGGcatttgtatagttttattttagaaattcaACAATTACAGATATGACCCACTAGCCCAGTATCggatcatttttaaatgaatacaaatattgTATGTGTCATTGCAATTGTGTTTGTAGAATGAGAACTGGGTGAAACTACATGACCACTCTTGATATCTGGCTGTAGACTGTGCTCCAGTGAGTGACTCACAAGAAGAATATAATATGCTTGTTGTAGTTGCTTCAAATAAACCATCCTTATTTTTCTAAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228931 lncRNA downstream 84707 9283300 ~ 9283510 (-) True G193361
TU228930 lncRNA downstream 85090 9282693 ~ 9283127 (-) True G193360
TU228929 lncRNA downstream 87265 9280653 ~ 9280952 (-) True G193359
TU228926 lncRNA downstream 93927 9274078 ~ 9274290 (-) True G193356
TU228925 lncRNA downstream 95563 9272417 ~ 9272654 (-) True G193355
TU229023 lncRNA upstream 55597 9475084 ~ 9475984 (-) True G193447
TU229029 lncRNA upstream 90246 9509733 ~ 9509939 (-) True G193453
TU229056 lncRNA upstream 114242 9533729 ~ 9534024 (-) True G193474
TU229058 lncRNA upstream 115972 9535459 ~ 9536612 (-) True G193476
TU229104 lncRNA upstream 168464 9587951 ~ 9588686 (-) False LOC113527759
XM_026915294.2 mRNA downstream 117102 9162224 ~ 9251115 (-) False myocd
XM_034309436.1 mRNA upstream 62063 9481550 ~ 9499180 (-) False foxk2
XM_034309435.1 mRNA upstream 62063 9481550 ~ 9499180 (-) True foxk2
XM_026915915.2 mRNA upstream 80773 9500260 ~ 9509293 (-) True wdr45b
XM_026915580.2 mRNA upstream 97722 9517209 ~ 9520812 (-) True si:ch1073-357b18.4
XM_034309627.1 mRNA upstream 167679 9587166 ~ 9590116 (-) True LOC113527759
trnal-aag_5 other downstream 284407 9083729 ~ 9083810 (-) True trnal-aag_5
trnal-aag_4 other downstream 285277 9082859 ~ 9082940 (-) True trnal-aag_4
trnal-uag_6 other downstream 286211 9081925 ~ 9082006 (-) True trnal-uag_6
trnal-uag_5 other downstream 286960 9081176 ~ 9081257 (-) True trnal-uag_5
trnaa-cgc_3 other downstream 287136 9081010 ~ 9081081 (-) True trnaa-cgc_3
trnam-cau_28 other upstream 96327 9515814 ~ 9515885 (-) True trnam-cau_28
trnar-ucg_9 other upstream 96585 9516072 ~ 9516144 (-) True trnar-ucg_9
trnal-aag_7 other upstream 170888 9590375 ~ 9590456 (-) True trnal-aag_7
TU229103 other upstream 171074 9590561 ~ 9592538 (-) True LOC113527760
TU229102 other upstream 171817 9591304 ~ 9592538 (-) False LOC113527760

Expression Profile