Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU229098 |
| length | 655 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G193509 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 9587165 ~ 9587819 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU229034 | lncRNA | upstream | 71026 | 9515921 ~ 9516139 (+) | True | G193458 |
| TU229031 | lncRNA | upstream | 71703 | 9512821 ~ 9515462 (+) | False | mrpl58 |
| TU229030 | lncRNA | upstream | 74764 | 9512185 ~ 9512401 (+) | True | trnaq-cug_13 |
| TU228960 | lncRNA | upstream | 200771 | 9386143 ~ 9386394 (+) | True | G193390 |
| TU228956 | lncRNA | upstream | 207050 | 9379273 ~ 9380115 (+) | True | G193386 |
| TU229133 | lncRNA | downstream | 64353 | 9652172 ~ 9653260 (+) | True | G193542 |
| TU229145 | lncRNA | downstream | 76111 | 9663930 ~ 9665516 (+) | False | arhgap23b |
| TU229153 | lncRNA | downstream | 107090 | 9694909 ~ 9780955 (+) | True | G193544 |
| TU229297 | lncRNA | downstream | 236228 | 9824047 ~ 9824468 (+) | True | G193645 |
| TU229298 | lncRNA | downstream | 237608 | 9825427 ~ 9826864 (+) | True | G193646 |
| XM_026915708.2 | mRNA | upstream | 27788 | 9523356 ~ 9559377 (+) | True | LOC113527682 |
| XM_026914917.2 | mRNA | upstream | 71549 | 9512784 ~ 9515616 (+) | True | mrpl58 |
| XM_034309459.1 | mRNA | upstream | 229204 | 9268493 ~ 9357961 (+) | True | LOC113527534 |
| XM_034309460.1 | mRNA | upstream | 229204 | 9315978 ~ 9357961 (+) | False | LOC113527534 |
| XM_026914687.2 | mRNA | upstream | 430877 | 9142501 ~ 9156288 (+) | True | map2k4b |
| XM_026915937.2 | mRNA | downstream | 18312 | 9606131 ~ 9627459 (+) | True | plxdc1 |
| XM_026915939.2 | mRNA | downstream | 18312 | 9606131 ~ 9627459 (+) | False | plxdc1 |
| XM_026914963.2 | mRNA | downstream | 42846 | 9630665 ~ 9643176 (+) | True | LOC113527304 |
| XM_026914493.2 | mRNA | downstream | 67468 | 9655287 ~ 9691595 (+) | False | arhgap23b |
| XM_026914491.2 | mRNA | downstream | 76076 | 9663895 ~ 9691595 (+) | False | arhgap23b |
| trnaq-cug_15 | other | upstream | 73330 | 9513764 ~ 9513835 (+) | True | trnaq-cug_15 |
| trnaq-cug_14 | other | upstream | 74534 | 9512560 ~ 9512631 (+) | True | trnaq-cug_14 |
| trnaq-cug_13 | other | upstream | 74925 | 9512169 ~ 9512240 (+) | False | trnaq-cug_13 |
| trnar-ccu_4 | other | upstream | 77369 | 9509724 ~ 9509796 (+) | True | trnar-ccu_4 |
| TU228953 | other | upstream | 217250 | 9368243 ~ 9369915 (+) | True | G193383 |
| XR_003402888.1 | other | downstream | 47058 | 9634877 ~ 9635067 (+) | True | LOC113527805 |
| trnal-aag_8 | other | downstream | 476726 | 10064545 ~ 10064626 (+) | True | trnal-aag_8 |
| trnaq-cug_16 | other | downstream | 1698378 | 11286197 ~ 11286268 (+) | True | trnaq-cug_16 |
| TU231182 | other | downstream | 2884864 | 12472683 ~ 12473739 (+) | False | LOC113527673 |
| XR_004579176.1 | other | downstream | 3895482 | 13483301 ~ 13558513 (+) | False | tcf7l2 |
