RNA id: TU229298


Basic Information

Item Value
RNA id TU229298
length 1214
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G193646
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 9825427 ~ 9826864 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatgttcattGCCATATTGTATAACTGattatcggcacatgcctaATCAGAACTAAAACAAGCACATGATTCAGTCTGATCAGTCAagcatacattaataaatagaGTAGCCATGATACATAtgaatattttacacaaaaacaaaagtgttcaTTTAGTCTTAattctgaaaatatattaaGCTTATTTGAAACTGAATAGAATGCTGGCGGATGAAGACGTAATCATTTTGACAATGACAGACATGGCTGTTTCCTTTGTGTAacaatttaaaagaaatcacAGTATAGTCCAGCTAAAGTTTGCATTGAATTTGTGTTTCAGAACTAGCTTTGCCCAAAGCCTCTCTGTTCATCAGTCTGGGTCTGAGTCATGGTGAAAGTGGACAGCATCTTGACTCATGGCTCAGCGGTCCACATTCATCCTGCGTAGCTTCTCGGGCAGGCTGTCCTCGGGCCGGCCGCCAGCCGCTGGCAACTGGTTGAGGTTGGGCCCTGGCACTGGAGTAGGCATTAGAGGCAGTCTGTGATGCTCCAGCTCTCCTGCTGACAGGACATGTGGTTCTGCCTTCATCTGGTTGTTGGACTCCTCCAGCCTGGTTGACAAGCGTAGGGGGTCACCTGTGTTGGATGTTTTTTCGGCTGCTTGTGTACTGCTGGCTTTCCCAGCCTCTTTACCATTTCTGGAGCTCATACGCTGGAGCTTGCTGGGCAACCTAGAGGCCGTTCCTTCAGTGTGGGAGGCACCATCAAGAGAGAAGATGCGCTCTCTGCGGCTTCGCGGATCTCCCGGAGTCGGGGTTAGAGGAGGAGCAGGGGAAGGCAGGCAAGATGATTCCTCCTGTTCCTTTACACTGTAGGGAGGTGTGGGAACCTCAAAGGTGCTGTGGAACTGCGAGTAGTCCACTCGGAAGAAGCCCTCCTCCAGAGACATAACCGGAAGGAAGCGGTGCCCCCACAACACCTCGTCCTCTGTGTAAGATGTCCGAGCCTGGCAcgtcatACCTGTGGTTTCCACTATCCCTTCAAGGATAACAACAATCTCAAACTGCTCACTCATGAGTGAGCGCTGTGAGAGGTCGAAGAATGGGCTCTTGGGATTAATCTCATGGCAGATGGTGAGAGGAGAGACGAGGAAGAGTTGGTCGGCGCCCGTTCCAAACCCAACGTCCAGCTCTCTTTGGTCCAAGGGCAGAAACTCCCCCTCAGGTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229297 lncRNA upstream 959 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 44472 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 159911 9663930 ~ 9665516 (+) False arhgap23b
TU229133 lncRNA upstream 172167 9652172 ~ 9653260 (+) True G193542
TU229098 lncRNA upstream 237608 9587165 ~ 9587819 (+) True G193509
XR_004579148.1 lncRNA downstream 317489 10144353 ~ 10148786 (+) True LOC117598497
TU229556 lncRNA downstream 397838 10224702 ~ 10226319 (+) True G193842
TU229539 lncRNA downstream 498092 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 498776 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 506042 10332906 ~ 10336247 (+) False G193828
XM_026914984.2 mRNA upstream 39043 9732360 ~ 9786384 (+) True svild
XM_026914985.2 mRNA upstream 39043 9740804 ~ 9786384 (+) False svild
XM_026914753.2 mRNA upstream 96446 9724009 ~ 9728981 (+) True nmt1b
XM_026915889.2 mRNA upstream 102553 9707683 ~ 9722874 (+) True plcd3b
XM_026914757.2 mRNA downstream 14519 9841383 ~ 9848378 (+) True znf281b
XM_034309582.1 mRNA downstream 28870 9855734 ~ 9869864 (+) True muc13b
XM_034309584.1 mRNA downstream 28870 9855734 ~ 9869864 (+) False muc13b
XM_034309588.1 mRNA downstream 28870 9855734 ~ 9869864 (+) False muc13b
XM_034309591.1 mRNA downstream 28870 9855734 ~ 9869864 (+) False muc13b
XR_003402888.1 other upstream 190360 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 311592 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 312796 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 313187 9512169 ~ 9512240 (+) False trnaq-cug_13
trnar-ccu_4 other upstream 315631 9509724 ~ 9509796 (+) True trnar-ccu_4
trnal-aag_8 other downstream 237681 10064545 ~ 10064626 (+) True trnal-aag_8
trnaq-cug_16 other downstream 1459333 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2645819 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3656437 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3656437 13483301 ~ 13558429 (+) False tcf7l2

Expression Profile