RNA id: TU229537


Basic Information

Item Value
RNA id TU229537
length 3225
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G193828
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10324956 ~ 10336247 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccTAAGCAGGTTGTGGGACAGCTGCAGGTGGCAGTATCATCACTCaccatatgttttatttatttatttatttattgaaaaattatgcaaaatCAAAATCTGCCTAtcagaaatttatttatttgtttctttccaTTTTAGATTTTAAGCCTAACACTAACTGCAACCTGCCTGAACCAAATCAAATGGCAAACCGCAATCTTTTAGGAGGGTGACAGAAAAAGACGGAGAGATTTGTTCATTCAAAAGTCCTAAATCTTGAAGCTTAACCTTCAAAATAAATCCTTTCAATaagatttcaaaataaattagaTTTCTACATGTGCAATGTGAGGGAAGCTTACAGAAGCCTTTTTACATGTCAAGAAATGTCCAAGATGCAACACATTTATCTAAGTTTTAAAATTTAGAAGGGCATTTCACTGTTTATTCTTGTGTTGTAATAAAAATTGAGCTGACTGACTAAAATAAAACCTTGTAAAAGTAAGTCCCAGTAAGACCTAACTAGTATAGCAACACCAGCCTCATGTATGTACTACATACATGTGCAATGTTACTGATCCATCTTGGATAATTATAGACACAAGTAAGTGATGCCTGTACAGTAATGTAGCCAAGTGTGTATAGAGGAATGTCGCTTAGGAATCCTCTGTGGATCCTAATGCTGAAACGTCTGTACATTCCTTCTGCTCAGTCCCTCCATGCCAGAAACAGAGCTGGAAATCTCTGGctttaacagtttaacagtttttctttttcattatacCATTTATCCCAATTGACAGTGTATCCAATGTGTCACCTATGTGTCATGTACATGTAATGCAAGAactaattaaatattcagttccaTATTTCTGCAACTGTTTTATGTCTCTTGGATAAAAATTGTATATCAAGCTGGTTCATGcaatattatgtgtgtgttaaataatcGACAGATTACAGTTGTacaccaaatgcaaatttatttcattgtcAAAAGTGCAAAAGGCATTTTATATTTGCACAAGTTAGGCTCTGTACATAATTACATACCTAACAAGCAATAAATGAgcaataaatagattttaagaCAATTTTTCTTGCAGTGAGAGTTCTGAgttgtcataaataaatacatatataaaaaaattgattaaGTATTGGAGCCAGGGGCTCTACAAAAGTATAGAGACCTatttccaaaaagaaaaaagaaatggagtCCGGGAGCACTTAAGCCTTCACAAGGGAAGCAAACTCTGTTGAatagaaaacaacagaaacaaacaattaataaaacatacttAGGGTCTATGATATGTTTCATGTCCATCATCTCAGAATTACACTTGTGCTTTATTAAGAACCAGCTTTAAATTCTACATGAAAGGTACATTTGCATGAggtgttataataataaaacaatggcATTTAATTGTAGTTTTGCTCTGTCCATCAGTAATATATGATGCGTCGGTCCAATGAGTAGCATTAAGTGTGTGCCTACAGTAGATTATACTTGGAATTTTAGACTTTTGTTTAAGAACTAATACAAATAAGCTTAACAAATATACTAGACATTTTGTAACATTAAGGTATACAATTAATTAAGCTACACAATCATTGGCAGTACCCTGGCAGTAGGTACAGTACATATCCAAGTATATAAGATAACAGTATCTGCTGTCTCTTGACCAAGGCTTTAAAGTTGGTTTTGTTGGTACCATTATGCATTGTAGCAGTCttctattcattattttaagatTAGCGATTCTGAAACCTTGTTCAAACTGCGTGAAGAATGAAAAGTGTTCATTTGATTCTTAAATTGTAGCACTTAGTATAGAACAAATTCACAAACTGCCCTTTTTTTTTGATattgtaatatgttatcgttCATCTTCAGATGTGATTGTAGATTATGGAGCCAGTgttgtcattttattattttaaggtTACAAAACTTGCAGGATTGCCCCATTACTAATCTGTTTGAAATGCAATTAAATACCTTCAACTCCAATTTTGCCATCACCATCACTGTCACCAGCTGCAAGGAAGGCCTTGGTCTCAGCATCAGTCAGAGCTCTGGCACCAGCAGAGAAGTTCTGCAGGAACAGCtcagctcctcctcctcaaTAAATCCACTCTTGTCCTGATCAATTACATAGAAGGCCTTCTTAACATCATCGTCAGATTTTGCTGACAGGCCAGCCTTGGCAAAGAAGGTCTTGTAGTTGAAGCTATCAGCAGCTAGAAAAAGTGAGAAACTCCACTtgttagtatttttttcttcttctttttttgcaaCTAACAGATTGTTTAAAATACTACCAGtcaaatgaaacatttcatattaatgtttaaatctaGTGTTTTCAAATGGCTTCTATTGTGAATGATCATTATTAACTTTCTCCAGTTAGAACCCAATTGGAAAGCTACCACTGTTGACTATAAAGAAACCTTAAGGaatgtcgtttttttttttctaggacTGTAGAATGAACAGAATTGTAAGTGTATGTCTTACCAGCGCAGTCTTTGATGGCTGCAGCAATATCCTCTTCCTTAAGAATTCCAGCGAAGGCCATTTTTAGATATCTGTAAGAGTCGATAAGAGTCAGAAAAGTCCatttaaatgtcacatttaaAAGACATACATTTGGCTTTTAGCATTTACCCTGTATACCATACTGGCATAAAGTATTAAGGCTTGCACTGTAGCATATGCATAGTAAAATcctcagtgttaaattaacacctaGAGTCTTCATGTGAATCTAAACAATAAGTTGTGCTGTATAGCAGTGGCAACAAAACCATCACTTAACCATCATTGTACCCAGCATAATCTTCACATACAATGTTCATATAAATCCTGGAGACATATGAACATACAGATCTAGACATTTAAATTTAGCTGTACAGGCCTGATTCTTAAACCTGTCACCCCAAatttcctatcacagcatgaACGAGAGAAGCTTAGGCTAGCAAGCTCATCCTCGGGCAGATAAAAATCCATGATGAGATAATAGCTTAGAATAAAGAAGGCAGCCATATCCTGCAGAAGTAGATCCATTGCATCCACCAGCAAGTTTTTGCTCCTCTTTTCATTATGTGTATTCCATGATGGTGAAAGATGGCGAGATGAGTGTGCAGTGATGGGCCTCACCTTTGTGCTGCTGCTCTCTACAAGGGATGTGGCAGATTGCTTTGGCCAAGAGTGGCTTCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229539 lncRNA upstream 2921 10324956 ~ 10329985 (+) False G193828
TU229556 lncRNA upstream 106587 10224702 ~ 10226319 (+) True G193842
XR_004579148.1 lncRNA upstream 184120 10144353 ~ 10148786 (+) True LOC117598497
TU229298 lncRNA upstream 506042 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 508438 9824047 ~ 9824468 (+) True G193645
TU229700 lncRNA downstream 13952 10350199 ~ 10350620 (+) True G193972
TU229865 lncRNA downstream 257982 10594229 ~ 10662463 (+) True G194091
TU229853 lncRNA downstream 308691 10644938 ~ 10646453 (+) False msrb1b
TU229857 lncRNA downstream 323631 10659878 ~ 10660950 (+) True G194087
TU229892 lncRNA downstream 375074 10711321 ~ 10712015 (+) True G194113
XM_026915721.2 mRNA upstream 36383 10290457 ~ 10296523 (+) True rsph10b
XM_026915722.2 mRNA upstream 36383 10290457 ~ 10296523 (+) False rsph10b
XM_026915377.2 mRNA upstream 42490 10280686 ~ 10290416 (+) True pms2
XM_026914923.2 mRNA upstream 78269 10239770 ~ 10254637 (+) True cyth3a
XM_026915000.2 mRNA upstream 117951 10201989 ~ 10214955 (+) False atad1b
XM_026915350.2 mRNA downstream 19530 10355777 ~ 10359207 (+) True bhlha15
XM_034309040.1 mRNA downstream 81654 10417901 ~ 10486419 (+) False trrap
XM_034309042.1 mRNA downstream 81654 10417901 ~ 10486419 (+) False trrap
XM_034309041.1 mRNA downstream 81798 10418045 ~ 10486419 (+) False trrap
XM_026915821.2 mRNA downstream 82637 10418884 ~ 10487467 (+) True trrap
trnal-aag_8 other upstream 268280 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 697839 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 819071 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 820275 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 820666 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 949950 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2136436 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3147054 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3147054 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6519523 16855770 ~ 16863495 (+) False anapc16

Expression Profile