RNA id: TU229556


Basic Information

Item Value
RNA id TU229556
length 1578
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G193842
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 10224702 ~ 10226319 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAATCTGGGAGGATGGAtatgggaacactgggcatggaTGGGATACAGGGTACCAcgcatacacattcacacctaggagttCAGCAATTTATCTCAGTCAAATCActcactggcatgtttttgggaggtgggaggaaaccacagTACCTGGAAGAATCCCCCACATGGACCCAGGGTgaacatacacagaaatgttgcacagacagtaacccaaactTAAAAGATCGCATAAGGGACTCTACCCACTGATTCGTCCGATTTTGGTAAACTCGATTAACcttttacagtcaggtccagaagtatttggacaatgacagagtttttgtgattttgcctttatacaccactacaatggatttgaaataaaacaatcaagatgtgatcgaagtgtagactttcatctttattttaagaggttccacaaaaatgtgGCATTTAccctttaggaattacagccattttaagcaaagtgcttccattttcaggggctcaaaggtatttggacaaaatgacataattgtaaatataaccataattttaatacttggatgaaaatcctttgcagtcctGACTGTATATTCTCAACATAATTAGCACtaaattataggCATAATCATGATACACACTCTCAAAAAGAGAAAAGCATTTCAAGAAAGttgaatatattcatattatttgtAGCAAACCAAAGTAGTATTTAGCAAACCAAATTCTTGTTTAATCCTTACTTTGCAAAAACAAACTAATTTGTTGGATATTTGTGTTTGTCAAATATTTAAGCCTGATTAATAAGAGGATATTGACAGAGCCACCATCACTCTATGCATTTACACAACAGGCTACGTCAGTGCAAACCAAACCAAGACACCagactgtttattttaaaagtgcacacttcaaataaaaatatgcctttttttatttgaaaaataaaaaaatagtagaaATATATTTGGTACCTTACAGTCTGAGTACTTAATCAAATTTGGCTTCTGTTAAGAAATGTTCtaactaaagaaagaaaaaactcatAAAACCATAAATAAACCGCATATTTGGTCAccaataaaatcacacacatttggTTAGCCATCTCACCCGTGATTTCACCCACAATAAAAGCTTGTTCATTACAGTACTGGCATATTCACTTTCACCCATTTTCCTTTACTTTCACCCCCAGCCAAACCTTTTGCTTATCTACATCACAGTTCAGTGTTCTTGACTTTATCTTTAGGCAATTCACATTCTTTCTTAAAATCACAGCCACCCAGGAGATCAGAGTAGTGGTTCCTGACTGTGTCATACAGTGGAGCTGGGTCACTTATGTTAGGAAAAGCCATTGGTTTCTCATTGAGGAAGAACTGGAGCCTGAGTCCATCTGTGCAGTCATATAGGACAAAGAGCAGGTTTGCGGCGTAAGGCACTATTTGACTGCTGCGGAACTTGCGGCTGTGCTGCAGAAGGAAGTTCTTGGCCGTTAGTGGCGTTTCGTCCCTGAAGAAACCCATCAGAGACAGCAGAGGCAGCAGAGTCTCAGCATGGCCCACCTGAATGGTAACTGCCTTCATCACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579148.1 lncRNA upstream 75916 10144353 ~ 10148786 (+) True LOC117598497
TU229298 lncRNA upstream 397838 9825427 ~ 9826864 (+) True G193646
TU229297 lncRNA upstream 400234 9824047 ~ 9824468 (+) True G193645
TU229153 lncRNA upstream 443747 9694909 ~ 9780955 (+) True G193544
TU229145 lncRNA upstream 559186 9663930 ~ 9665516 (+) False arhgap23b
TU229539 lncRNA downstream 98637 10324956 ~ 10329985 (+) False G193828
TU229536 lncRNA downstream 99321 10325640 ~ 10336247 (+) True G193828
TU229537 lncRNA downstream 106587 10332906 ~ 10336247 (+) False G193828
TU229541 lncRNA downstream 106587 10332906 ~ 10336247 (+) False G193828
TU229700 lncRNA downstream 123880 10350199 ~ 10350620 (+) True G193972
XM_026914999.2 mRNA upstream 9747 10201989 ~ 10214955 (+) True atad1b
XM_026915000.2 mRNA upstream 9747 10201989 ~ 10214955 (+) False atad1b
XM_026915217.2 mRNA upstream 57787 10135916 ~ 10166915 (+) False rnls
XM_034309212.1 mRNA upstream 57787 10135917 ~ 10166915 (+) False rnls
XM_026915216.2 mRNA upstream 57787 10135918 ~ 10166915 (+) True rnls
XM_026914923.2 mRNA downstream 13451 10239770 ~ 10254637 (+) True cyth3a
XM_026915377.2 mRNA downstream 54367 10280686 ~ 10290416 (+) True pms2
XM_026915721.2 mRNA downstream 64138 10290457 ~ 10296523 (+) True rsph10b
XM_026915722.2 mRNA downstream 64138 10290457 ~ 10296523 (+) False rsph10b
XM_026915350.2 mRNA downstream 129458 10355777 ~ 10359207 (+) True bhlha15
trnal-aag_8 other upstream 160076 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 589635 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 710867 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 712071 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 712462 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 1059878 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 2246364 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 3256982 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 3256982 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 6629451 16855770 ~ 16863495 (+) False anapc16

Expression Profile