RNA id: TU230204


Basic Information

Item Value
RNA id TU230204
length 233
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G194380
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11120318 ~ 11120550 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctccctttgctctcaaaacagcctcaattcttcatggcttggattccacaagatgttggaaacattcctttgagattctggtccatgttgacatgattgcatcatgcaattcctgcagatttttcaggtgaacTTTCATcctgtgaatctcctgttctaccacatcccaaatgtgaactactggattcagatccggtgactgggaaggctgCTGAAGAACAACTCAtcgtcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230113 lncRNA upstream 24140 11093163 ~ 11096178 (+) True G194293
TU230188 lncRNA upstream 56636 11062164 ~ 11063682 (+) True G194365
TU230097 lncRNA upstream 152285 10965638 ~ 10968033 (+) True G194278
TU230092 lncRNA upstream 154701 10964950 ~ 10965617 (+) True G194276
XR_003402886.1 lncRNA upstream 330301 10788767 ~ 10790017 (+) True LOC113527761
TU230183 lncRNA downstream 14682 11135232 ~ 11206976 (+) True G194360
TU230242 lncRNA downstream 127213 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230438 lncRNA downstream 257911 11378461 ~ 11379190 (+) True G194571
TU230527 lncRNA downstream 472342 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 476980 11597530 ~ 11602441 (+) True G194623
XM_026915656.2 mRNA upstream 19815 11096965 ~ 11100503 (+) False maff
XM_026915654.2 mRNA upstream 19815 11097033 ~ 11100503 (+) True maff
XM_026915655.2 mRNA upstream 19815 11097218 ~ 11100503 (+) False maff
XM_026915487.2 mRNA upstream 182439 10912118 ~ 10937879 (+) True shisa9a
XM_034309550.1 mRNA upstream 182439 10912118 ~ 10937879 (+) False shisa9a
XM_034309087.1 mRNA downstream 16307 11136857 ~ 11141931 (+) True si:ch211-141o9.10
XM_026914568.2 mRNA downstream 16307 11136857 ~ 11141931 (+) False si:ch211-141o9.10
XM_026914567.2 mRNA downstream 17853 11138403 ~ 11141931 (+) False si:ch211-141o9.10
XM_026914569.2 mRNA downstream 17891 11138441 ~ 11141931 (+) False si:ch211-141o9.10
XM_034309088.1 mRNA downstream 18134 11138684 ~ 11141931 (+) False si:ch211-141o9.10
trnal-aag_8 other upstream 1055692 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1485251 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1606483 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1607687 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1608078 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 165647 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1352133 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2362751 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2362751 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5735220 16855770 ~ 16863495 (+) False anapc16

Expression Profile