RNA id: XM_034309360.1


Basic Information

Item Value
RNA id XM_034309360.1
length 4032
RNA type mRNA
GC content 0.42
exon number 27
gene id si:ch73-139e5.4
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11233590 ~ 11248213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGAGAGCTGGTTTATTACTGCGCAAGCTCTTTCTCGCTCTGTAGTTCATTAACAAGCAGGTGTCTCAGAGAGCACAAACAACTCGCTGTGACTGTCAACGTTTTTTTTACGgcgtgtttttttccttttgttttgtcttttgtcctTGGACTAGGCTAATATTCGATGATAAACCTGACACAGAGTGGACTAAACTGGCATTAGGTTGTAGATGTTTTTTTGGCTgaatttttttgctcatttttaaatcttttattcagCCCCTTATGCTATTAACCCTCAAAAGACTTATATCTAGGCCTGTTTCCTACAAATATGACACTGTGCTAAATCCTGTGAAGACAGTTTGGGGACATTCGAgttaatttagacttttttttaagaaaggagtggatcatttattttttcaacgCAATCGTGTTGTAACAGCTGGTAATGAATAATGCGTTACTGGCTTTTTGTGTGCTTGTTGTGGACTCTTCCGAGTCGTCACTTAATGATCCAGTCTTGCCTAAACAGTATGTACCTGATGAATGTGGTGTTGCTGCAGGACGGCATGTCCCCCTGGAGTATGAACTTCGTTCAACCAGCAGTGATGAAAGCGATTGAATTCGATGCAGAGATCAACTACAAATACAatgtgacTCGCAATCTGACTGCCACCTACAATGGGTTCCAAACTGTTTATTACCGACATAAAGGCTGTAGCAGCAGCACCTGTGGGGGTGTAGAGATTCTGATAGACCTTAAGACCTCAGGAACGGTTGGCTGTGTTCTGCTGGGACCATCCTGTACCTATGCAACCTTCCAACTGGTGGATCTTGATGTTGGTCTAGAACTCAATATGCCAATCATCTCAGCGGGGAGTTTTGGCCTGTCCTGTGACTACAAGGCTAACCTGACGCGCCTACTGCCTCCAGCTCGCAAGGTCTCCAACTTCTTTATCAACTTCTGGAAAGTCTCTGACAGTATTAAGCATTCATGGAATAAGACatacatctacaaaaaaaacaataacacagaGGATTGCTTTTGGTACATGAATGCCCTTGAGGTTGACTCAGGCTCCTTTGCTTCCAGTGTTGAGAAAAGAGTGGTGCTCCGAAAAGAAGAAGAGTTCagtgctgcattaaaaaatgATAGAGAAAGTAACTtgtttattttatgcgGAACTCCTGATGACATTATGGAATTGAAGAATGGCTCTCTGGACGCTGATGCTCAAATTGCCTTTATTCTCATTGATCTGTACAATGACAGATATTACCTTGAACCATCCAATGATGCTATGAAGAATGTCTTGGTTCTGACAATGCCCAATACGAGGAATTACACCATAAGCAATAACACGATGAATGATTATATCGCCGCATATCATGATGCGGTGCTGTTGTTCGGGCGGGTGATGAGGGAAATTTGGCAGATTCCTGTCTTGGATGTAGATGGTGTCAAcgttaaatatttcagaaatgagTCATTTAAAGGTATTGCAGGAGATTATAGGTTAGATGAGCATGGGGACAGAGATGTGGTGTTTTCACTGATttacaccaacaccaacaatgAGTACAAAGTTCTGTATGAGTTTGACAccagcaataataaaacaacactgGTAGACATCAATCCTTCATTCATCTGGCCTCGAAAGCAACTTCCTGAAGATCGGCCTCATGCTGATAACAGAGGTCTGAGTGTGCAGAATATCATTGTCATATCACTGGGCTCGCTGGTATTGGTAGTGATAGCCACAGTTGCGTTTGTCTTTTACTGGCAGAACAGGTCATATCGCCGTAAACAGAAGCGATGGTCCCACATCCCTGTAGAGCTCATTACCCCTTTAGAGTCCAGTGAGAGAAATATGGTGTCTCTAAAGATTGATGAGGATGCCTGGAAGGATACGAGTCAGAAGATTCGCCGGGCACGCTATGATAAAAAGATTGTAATCCTTAAAGAGCTGAAGCACTCTGATGGCTACTtcagtgaaagacagagaataGCACTTAATGCACTATTACAAATCGATTATTACAACCTAATAAAATTCTACGGTACAGTAAAGATTGAGAATGAGGTTCTTGGAGTGTTTGAGTATGGAGAGCGAGGATCTCTGAGGTACGTACTTAATGATAGGATTTCATACCCAGAGGAGACCTTCATGGACTGGGAGTTCAAAATCTCTGTCATGTATGACATTGCAAAGGGCATGTCCTATCTTCACTCAAGCAACATTGAAGTCCATGGCCATCTGAAGTCCACCAACTGTGTCATTGATAATCGTATGGTAGTGAAAATTACTGGCTTTGGTTTTAATACTATCCTCAGTCCAGACAGAGATCTGTGGACTGCTCCAGAGCACTTACGAAAGGAGGGCATTTCTCAGAAGGGAGATGTTTATAGTTTTGCCATAATTGCACAGGAAATCATGCTGAGAAAGTGCATATTCTACACCAAGGCTTGTTCCTGACGAACAGAAAAGTTGGACCGTGTGCAGTATCCCCGAACGCTTTGTTTTTTCAGGCCTGACCTAAATTATGAAACTGCAAGTGAAAAAGAATTggagGTGTACTTGCTTATCAAATCCTGTTGGGATGAAGACCCGGAGAAAAGACCAGATTTCAAAAAGATTGAAAGCACTTTAGGAAAGATTGTCAGTCTACACAACCAGGCCAATGAGAGTTACATGGGGAATCTGATTCGGCGGCTACAGATGTATTCCCGTAACCTAGAGCACCTGGTGGAAGAGCGCACAGCTCTGTACaaggcagagagagatagagcggACAATCTCAACTTCATGCTTCTTCCAGGGCCAGTTGTACGCTCTCTGAAGGAGACTGGCATTGTGGAGCCTGAGCTGTTTGATGAGGTCACTATCTACTTTAGTGATATTGTGGGTTTCACCACCCTTTGCCACTACAGCACACCCATGGAGGTGGTGGACATGCTCAATGACATTTACAAAAACTTCGACAGCATCCTCGACCATCATGATGTCTACAAGGTAGAGACAATTGGCGATGCGTACATGGTGGTGTCTGGTCTCCCACGGCGGAATGGAGACAGACATGTGATGGATATTTGCCATATGGCGCTGGACATCCTTTCCTTCATGGGCACTTTTGAGTTGCGCCACCTACCTGGCTTGCCTGTATGGATCCGTATAGGGGTGCACTCAGgccCTTGTGCTGCAGGTGTCGTGGGGCTGAAGATGCCCAGATACTGTCTGTTTGGAGACACAGTGAACACTGCCTCTCGCATGGAGTCTACAGGATTACCCTTGAGAATCCATGTAAGTCAGTCAACAATCAACGTTATCGAGCGGGCTGACTGCAAGTTTGAATATATGAAGCGTGGAGAGACATATTTAAAGGGTAAAGGCAAAGAGACTACATACTGGTTAACAGGAGCTACTGGACAAAACTACAACCTGCCCTATAGTTGCTCAGAAACTAACTGTGAAgttttgtgtattattattgaaGTTGAACGAATTACAAGTGTAGCTAATCTGCTGTACTCTTCCACTGCTGATGGTAGTGAAAACTTCCAGCGTCTGCAGCAACACCTGGCGGAGATGATAAAGAGTTGTCTGGAGCAGAGGTCTCCAGGTCTTGAGAAGAGAAAGACACTTTCAGCACGTCAAAGGAAGCTCAGAGGTCACTCAGAGCTGATTGACAGTGAGCAGCCTGAATACTTTCACCTTGCTACTGTAGACAACCTTAGTACATACCTGTAACCTATGAAATGTTTGTTCTATGTTCATGTGCAGAATATTGTAAATAATCTATATTTAACTATCAATAACTATTGTTTTGCCTTTTTATGTAGTATTCTTTTTGAAGCCTTTTGAAATGTTTAGATACTTTTCTTAGTTTATAGTAAATGCATGTTTTCCACTTATAAGTGTGAACTTctgtgaaaattaatttttaagccttttttttttaaatttagcagTTGTTGTGTATCTTTTGGCTGCAACCCATTTTAAAGAGAGGTAGCTATTAAATTGTACTTTACTACTGTT

Function

GO: NA

KEGG:

id description
K12320 GUCY2C; heat-stable enterotoxin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230183 lncRNA upstream 26614 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 113040 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 137412 11093163 ~ 11096178 (+) True G194293
TU230188 lncRNA upstream 169908 11062164 ~ 11063682 (+) True G194365
TU230097 lncRNA upstream 265557 10965638 ~ 10968033 (+) True G194278
TU230438 lncRNA downstream 130248 11378461 ~ 11379190 (+) True G194571
TU230527 lncRNA downstream 344679 11592892 ~ 11593091 (+) True G194627
TU230523 lncRNA downstream 349317 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 366176 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 470684 11718897 ~ 11719113 (+) True G194748
XM_034309083.1 mRNA upstream 1843 11227745 ~ 11231747 (+) False csdc2a
XM_026914744.2 mRNA upstream 1843 11227747 ~ 11231747 (+) True csdc2a
XM_026914747.2 mRNA upstream 1843 11227747 ~ 11231747 (+) False csdc2a
XM_026914743.2 mRNA upstream 1843 11228146 ~ 11231747 (+) False csdc2a
XM_034309081.1 mRNA upstream 1843 11228150 ~ 11231747 (+) False csdc2a
XM_026914613.2 mRNA downstream 17198 11265411 ~ 11272446 (+) True rangap1b
XM_026915923.2 mRNA downstream 24916 11273129 ~ 11278655 (+) True chadlb
XM_026914597.2 mRNA downstream 42840 11291053 ~ 11314637 (+) True ep300a
XM_026914603.2 mRNA downstream 42840 11291053 ~ 11314637 (+) False ep300a
XM_026914604.2 mRNA downstream 42840 11291053 ~ 11314637 (+) False ep300a
trnal-aag_8 other upstream 1168964 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1598523 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 1719755 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 1720959 9512560 ~ 9512631 (+) True trnaq-cug_14
trnaq-cug_13 other upstream 1721350 9512169 ~ 9512240 (+) False trnaq-cug_13
trnaq-cug_16 other downstream 37984 11286197 ~ 11286268 (+) True trnaq-cug_16
TU231182 other downstream 1224470 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 2235088 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 2235088 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5607557 16855770 ~ 16863495 (+) False anapc16

Expression Profile