RNA id: TU230527


Basic Information

Item Value
RNA id TU230527
length 200
lncRNA type intronic
GC content 0.50
exon number 1
gene id G194627
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11592892 ~ 11593091 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCGGGGCAATGAGAGACTTCCTGCGCTCCATCACTCCCAAGGCGTACCTCAGTCAGCTGGTGGCCTGCGGCACAGGCCTCATGTCTCATTCTTATTAGCATCTCTCCTGCCTCcacagaaagagtgtgtgtatgtgtgtgctgctgAGTGTAATACAAGCAAACTAGGTGAATAAAGTACTAggaaaatgaagtaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230438 lncRNA upstream 213702 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 344785 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 385916 11135232 ~ 11206976 (+) True G194360
TU230204 lncRNA upstream 472342 11120318 ~ 11120550 (+) True G194380
TU230113 lncRNA upstream 496714 11093163 ~ 11096178 (+) True G194293
TU230523 lncRNA downstream 4439 11597530 ~ 11602441 (+) True G194623
TU230532 lncRNA downstream 21298 11614389 ~ 11621269 (+) True tmem106a
TU230688 lncRNA downstream 125806 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 445412 12038503 ~ 12038728 (+) True G194828
TU230784 lncRNA downstream 469744 12062835 ~ 12063498 (+) False LOC113527436
XM_026915192.2 mRNA upstream 28651 11562931 ~ 11564241 (+) True hoxb1b
XM_026915190.2 mRNA upstream 30957 11544801 ~ 11561935 (+) False hoxb6b
XM_026915191.2 mRNA upstream 30957 11544801 ~ 11561935 (+) False hoxb6b
XM_034309122.1 mRNA upstream 30957 11553204 ~ 11561935 (+) False hoxb6b
XM_034309123.1 mRNA upstream 30957 11558384 ~ 11561935 (+) False hoxb6b
XM_026915063.2 mRNA downstream 9508 11602599 ~ 11612358 (+) True nbr1a
XM_026915002.2 mRNA downstream 20808 11613899 ~ 11619906 (+) False tmem106a
XM_034309334.1 mRNA downstream 21350 11614441 ~ 11619906 (+) False tmem106a
XM_026915004.2 mRNA downstream 31505 11624596 ~ 11627564 (+) True arl4d
XM_026915706.2 mRNA downstream 52769 11645860 ~ 11655850 (+) True dusp3a
trnaq-cug_16 other upstream 306624 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1528266 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1957825 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2079057 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2080261 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 879592 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1890210 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1890210 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5262679 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5984192 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile