RNA id: XM_034309334.1


Basic Information

Item Value
RNA id XM_034309334.1
length 1700
RNA type mRNA
GC content 0.40
exon number 8
gene id tmem106a
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 11613899 ~ 11621269 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagacagaaagcacTTCTTTTTCTTAGAAACGGGGTTAAACATGGGATTAACCAACATATATGACCAGTTCTAAGTCAGCGGACTGTCTATCTGAGACCCAGACACGTCGCGACCAGGGCTTTCTGAATTAGTCCATCTCTTTTTCAGTAAGTACAGCAGCCATCATGACCCATAACAAAGACAGGCAGGACTACGGCAGCATCACAGGAGAACACCACTGGGACGTGTGTCCTACCTGCCGGGGCTCAGGACGAATATCTAGAAGTGATGAGGCCCAGCTGGTGGCGGTTATTCCATGCAGTGACCAAAGGCTGAAGCCTAGTCGTACgaagctgtatgtgtgtacctcCATTACATTATGTCTTCTGACCTGTTTCCTGATCCTGTTCTTCCTCTTCCCTCGGAGCTTGGTCATGTCTCCTATATCTCTCCAGTCCTCCCTTGTCTATTTCACACCTCAGAATGTTCAGATGCTTATCACAAACAAACTAAACATCAGCAATCAAAATTATGTTAGCACTGAGGCTCATGATCTGGATCTACAAGTCCTGATTAATGAAATTGTGGTTGGGAGGACCAAGATCTCAAATGTGACCACAGTTCCCCCACGCTCACAGAAAACGTTTACTATTGTGACTAATGCCACCATTGAAGACCAAGGCCTGATTTATTACTGTCAGACATCTGCCATCCGGCCCCACACCTTGTATGTACATTTGCAAATGACTATAAAAGCCTACTACCTGTCACATGAGGAGCAGCTGTCTTTGGATACATATGAATATATTGATTGCGGAAGAAACACTACCATTCCTCATACTTTTCCATGACTTtgctgacatactgtatatgatgaaGAGAAACCAAAGGGAACACTGGTAGCAAGTGCCAAAGCTGATCTTAAAAGCAAACAGTTGGAATCTATCTATTAATTGTTAAATATAATCACAGAGTAGCTTACAtgtacttttaaatatattttatggtAAGTGTAGTATTTTTTTTGCTGCCGATGgcttgattgattaattaattgattacaTTTAATCAGTGGACCATCTGCAGTGTGAAAGTGCCTGTGCCCTACTGCAAATATCTACAAATTTTCTTATAGTTAAGATATAcacatttctttcattcattcattcatcttcagtaagcactttgtcctggtcagggttgcggtggatcctgggaacactgggtgcaaggtgagaatacagcctggatggggCGCCAGTCTATTGCAAGATTTGCACATCGAAATtaatgtgaaatttaaaaaatattatgtcGTTTACTTTGATTTGCACTTGGCAATAAACTAATTAGTTTTGTacatagttctttttttttttaacattctaaGGGAGGCCAGACAAAATAATGGCACACTGAAATAAGATAGATTCATCTTTAATAGTGTCATCATTATTAgtcaaaaatttaaaatagGCTCCaaatggtttgtgtgtgtgattttttttattatccatTTCCCTATTACATCACGTTACTGCAAATTAACATGGGCCCTGGAACAGCAGTGAGATTGGTCATCCACATCACCACTGTTGGGAATACTGTGTGgcctaaacacacaaaacatccaGCATTTATAAGGACATTGCCTTGCTTTTGACAGTTGTGAGAAACCTACTGAAGATATGATTCATTAAATGCATTacttcatttaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230523 lncRNA upstream 12000 11597530 ~ 11602441 (+) True G194623
TU230527 lncRNA upstream 21350 11592892 ~ 11593091 (+) True G194627
TU230438 lncRNA upstream 235251 11378461 ~ 11379190 (+) True G194571
TU230242 lncRNA upstream 366334 11247763 ~ 11248107 (+) False si:ch73-139e5.4
TU230183 lncRNA upstream 407465 11135232 ~ 11206976 (+) True G194360
TU230688 lncRNA downstream 98991 11718897 ~ 11719113 (+) True G194748
TU230779 lncRNA downstream 418597 12038503 ~ 12038728 (+) True G194828
TU230784 lncRNA downstream 442929 12062835 ~ 12063498 (+) False LOC113527436
TU230950 lncRNA downstream 520106 12140012 ~ 12140220 (+) True G194989
TU230966 lncRNA downstream 525095 12145001 ~ 12145207 (+) True G195002
XM_026915063.2 mRNA upstream 2083 11602599 ~ 11612358 (+) True nbr1a
XM_026915434.2 mRNA upstream 17364 11570656 ~ 11597077 (+) True skap1
XM_026915192.2 mRNA upstream 50200 11562931 ~ 11564241 (+) True hoxb1b
XM_034309122.1 mRNA upstream 52506 11553204 ~ 11561935 (+) False hoxb6b
XM_026915004.2 mRNA downstream 4690 11624596 ~ 11627564 (+) True arl4d
XM_026915706.2 mRNA downstream 25954 11645860 ~ 11655850 (+) True dusp3a
XM_026914515.2 mRNA downstream 44211 11664117 ~ 11669446 (+) True sost
XM_026915440.2 mRNA downstream 105497 11725403 ~ 11731988 (+) True meox1
XM_026914526.2 mRNA downstream 140075 11759981 ~ 11783433 (+) False etv4
trnaq-cug_16 other upstream 328173 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1549815 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 1979374 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2100606 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2101810 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 852777 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1863395 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1863395 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 5235864 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5957377 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile