RNA id: TU230779


Basic Information

Item Value
RNA id TU230779
length 226
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G194828
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12038503 ~ 12038728 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAGCCAGAGGTGGTAAGTTTTGGTAGAAGTGTTAGTAGGTCTATATGAACTTGTGTTTACTGCagttaaaacacaaacaaaaaaaaaaaagtaaaaaagtaagaaaaagaaaacactatAACCAAGACATGTTATTGATGCACATGCGGTGATGAAGGGATGGATCCAGAACTGAAATGGAGCAGTCCAAAGTGCAGTCCTAAGGAAActcaaataaagaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230688 lncRNA upstream 319390 11718897 ~ 11719113 (+) True G194748
TU230532 lncRNA upstream 417234 11614389 ~ 11621269 (+) True tmem106a
TU230523 lncRNA upstream 436062 11597530 ~ 11602441 (+) True G194623
TU230527 lncRNA upstream 445412 11592892 ~ 11593091 (+) True G194627
TU230438 lncRNA upstream 659313 11378461 ~ 11379190 (+) True G194571
TU230784 lncRNA downstream 24107 12062835 ~ 12063498 (+) False LOC113527436
TU230950 lncRNA downstream 101284 12140012 ~ 12140220 (+) True G194989
TU230966 lncRNA downstream 106273 12145001 ~ 12145207 (+) True G195002
TU230980 lncRNA downstream 135666 12174394 ~ 12176119 (+) True G195016
TU231012 lncRNA downstream 210332 12249060 ~ 12249755 (+) True G195047
XM_026915104.2 mRNA upstream 5150 11857394 ~ 12033353 (+) False cacna1g
XM_026915103.2 mRNA upstream 5150 11857394 ~ 12033353 (+) False cacna1g
XM_034309037.1 mRNA upstream 5150 11857394 ~ 12033353 (+) False cacna1g
XM_026915109.2 mRNA upstream 5150 11857394 ~ 12033353 (+) False cacna1g
XM_026915110.2 mRNA upstream 5150 11857394 ~ 12033353 (+) False cacna1g
XM_026915249.2 mRNA downstream 24080 12062808 ~ 12085359 (+) False LOC113527436
XM_026915251.2 mRNA downstream 24080 12062808 ~ 12075114 (+) True LOC113527436
XM_026915250.2 mRNA downstream 24080 12062808 ~ 12065553 (+) False LOC113527436
XM_026915677.2 mRNA downstream 102832 12141560 ~ 12142743 (+) True LOC113527660
XM_026914596.2 mRNA downstream 140295 12179023 ~ 12185038 (+) True cdk5r1b
trnaq-cug_16 other upstream 752235 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1973877 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2403436 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2524668 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2525872 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 433955 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1444573 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1444573 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4817042 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5538555 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile