RNA id: XM_026915251.2


Basic Information

Item Value
RNA id XM_026915251.2
length 3083
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC113527436
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12062808 ~ 12085359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tactccacacagacacgcaTTCTGACAGCGGAAAATCCAGCTGTAGCTCAAAGTGTTCGCTTCCCTTGGAATGCTCAAGATTAATACCctatttttcatttccttcatctttattatttcttttgaaCCTCATAATGCTTCGTGAGCTCTGCCATCAAGACGTCTGAGAAAGTATgtgaagtgatgaagaagagcaGAAGTTCTTCCACAGAGATGAAGCACCTGCCTATGACTCATTTGAATGTAGGCATTCAGACTATGCATTATACCATGATGACAACATCACTGTAGTTTTTATGCGTGAGCATAAATTCGAATCCAATATTCTGGAGATATGTCAAATGGAGTGACAGGATTTGCAGCATACATGGTCTCTGAGTAAACTCGTTGGAGATATCATGAgttagacaattgtgtgctatGCTCATTACAAATGCTAAACTACTCTCTGCTGGGAGGCAAACAGTCTGTGGGATTTAAACAAGTTGTTATGTAGACATGACCACTGTATCAGTGGAGTCACTGGTGGTGATGGTCGATAAAGTGCCTAATGGAACTGAGACTCCAGTGGCATCGTCTGCTGAAGATGTGGCTGCAACCTTCACCATTGGCACCATCCTCTCCCTCATGTGCCTTGTTGGCGTGTCAGGAAACATCTACACTCTGGTGGTCATGTGCCACTCAATGCGCTCTGCTGCctctatgtatatatacattgtCAACTTGGCAATGGCTGATCTCCTCTATCTGCTCACTATTCCCTTTGTGGTGTGCACCCACTTTTTAAAGGGTTGGTACTTTGGTGATGTAGGATGCCGGACTCTCATCAGTATGGACTTCCTCACCATGCATGCAAGCATTTTCACACTGACTGTCATGAGTACAGAGCGCTATTTTGCTGTTCTTAAGCCTCTGGATACAGTCAAACGCTCTAAGAGCTACCGTAAGGCTATTGCTATTCTGGTGTGGACAGCTTCACTGATTCTAACCCTTCCCATGATCATTGATGTAGAGCTAAAGACAGAAAATTCCAAATCAATGTGTCAGACCACACTAAGTCCTCTTTCTTACAAGATCTATATCACCTCCCTTTTCTGCACCAGCATTGTGGCACCGGGTGTCATAATCGGCTACCTCTACATCTGCCTGGCCCGTACTTACTGGATCTCACAGACAGAAAACTTTAAGCAGACTCAAAAGCTGCCAAACCACAAAGTGCTATATCTTATTTTTACAATTGTGCTTCTCTTTTGGGCCTGCTTCCTTCCTTTCTGGATCTGGCAGCTACTGGGCCAGTTCAAGCCAGAAATGGTTCTTTCGACCAAGGCCAGGCGCAACATCAACTATCTTACCACCTGCCTGACCTACAGCAACAGCTGCATCAATCCTTTCCTCTACACTCTTCTGACCAAGAACTACAAGGAGTACCTTCGTAAGAGGCAAAGAACCTGGACGTCTGGGAGCTATTTCAACAGGAGAAGCCGCTTCCAGCGGTCCCCTCGCCGCTCCCTGTCATCCAGCAGCCAGCAGTGTACAGAGAGTTTTGTGCTCACACACATATCACGTACCAACAACAGCAGTCTGTGAGGTATTTATTTCAAACTAATGTGAGGAGTGAAGCTACAATcaattattcatcattattcCCCTGTTGGTTCCGTGTCAGTGATGAAAGGGTGAGTGGGTGAATGAGAATACATTATGGGTGAATGAGTGTACATTTATCAACATCATCCCTGGAAGTGAAACAGGAAATGTAACCCATTTTTAtacttaaaaaatgaaatgtcagttacaCTGCTTCTACAGTGCACTTTTAGATAAAGAGACTGTAATTTACGATGACATTGAAAAGTCTGAAATGTATACTGTGTCAGAAATGGAGCCCATTTTCACAGGTTGTATGAGATAATTGTTGCAATTTTAGAATATAATATTTCATGAACTTCGTCTCTGTGTTTCTATAAATGTTCTCTATACTGTGTTATCCTTGTAGGAGTGTTTATGTCCTGTGCATTAGTACAGGAAATGTTGATAATGTGATTTAGTGTTGGGTACATGACATTTTCCCAGGAGGCTGTGTAAGTGCCAGGGTTAGTAACTTGATCTGTCAAGCTTTTAATGAGTTGTGACACTTTACTACCAGTGCATGTTTTTTGCACTGCAAATAATATTAGACATACTGTACAGAAGACCTTCTATACTCATAACCTTCAATCAGTTTCAAAGTGACTTAATGAGAGGTATTAAATAGCTCTATAACACAGTACACTTTTCCAGTCTTCTAGCTCAACATGTTGTAAGTCTGTGCCATGTTCCAGGCACATATGTGAACACTTCACAAAGGGCTGTTTCCTTCCTCTGGCACGTAACCAGAGTACTGCAATAATTACTTCTCCTGAATAAAGGGTATCACAAAAGCCCCACAGCCTGGCTGAACACCTGCAGACTTGGTCACATCtgtgctgattattttcatgCAAAATCTCATGAATACACTTAATATCATATTTGTTGTTATGGAAGCAGTGAATTGGACAACTATCGGTAACTTATTTATTACGTTTACTATTGTGAGTGGAaagtaattacattttattaaagttcCCTGTTTATAGCTTTTTTCTGCTAGGTTCACCATGCAAAACTTTTAGTTGGGTGCTAAATTATATCTGTCTTTGGGCTTGCACTCACTATTCTTGGCTTGTGGTTTTATTGCAAAGGAAAACACCTGGACCTCATTTCTTGCTCCACCttgtaatgtatataatttcACAATCTTGAAACCCATTAACCTCACTAAATCCTTACAATACTGataaaagtaatttattaaaaacctattgatatacaaataatattgatatacgaatatatttgtgtgtaacCAGCTTTTATTTGGGAGCAGCATGGAGCTTTTAAAAACATCTGGATTTGGGTAAAACACTAAAGTCACCAAGAAATTATCAAGGGTCCAATCTTTTTCCATTGATCTAGGGCAAGTTGACTGTCTCAGACATTATTAATACAAGATCCATCCAAGAAGCCAGAATGtaagaaatgtacattttaacacCAGAATT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008217 regulation of blood pressure biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001604 urotensin II receptor activity molecular_function

KEGG:

id description
K04241 UTS2R; urotensin 2 receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU230779 lncRNA upstream 24080 12038503 ~ 12038728 (+) True G194828
TU230688 lncRNA upstream 343695 11718897 ~ 11719113 (+) True G194748
TU230532 lncRNA upstream 441539 11614389 ~ 11621269 (+) True tmem106a
TU230523 lncRNA upstream 460367 11597530 ~ 11602441 (+) True G194623
TU230527 lncRNA upstream 469717 11592892 ~ 11593091 (+) True G194627
TU230950 lncRNA downstream 64898 12140012 ~ 12140220 (+) True G194989
TU230966 lncRNA downstream 69887 12145001 ~ 12145207 (+) True G195002
TU230980 lncRNA downstream 99280 12174394 ~ 12176119 (+) True G195016
TU231012 lncRNA downstream 173946 12249060 ~ 12249755 (+) True G195047
TU231048 lncRNA downstream 295942 12371056 ~ 12371285 (+) True G195083
XM_026915109.2 mRNA upstream 29455 11857394 ~ 12033353 (+) False cacna1g
XM_026915677.2 mRNA downstream 66446 12141560 ~ 12142743 (+) True LOC113527660
XM_026914596.2 mRNA downstream 103909 12179023 ~ 12185038 (+) True cdk5r1b
XM_026915940.2 mRNA downstream 194571 12269685 ~ 12317104 (+) True tbkbp1
XM_026915883.2 mRNA downstream 273846 12348960 ~ 12360643 (+) True tbx21
XM_026915356.2 mRNA downstream 303364 12378478 ~ 12383567 (+) True pnpo
trnaq-cug_16 other upstream 776540 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 1998182 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2427741 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2548973 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2550177 9512560 ~ 9512631 (+) True trnaq-cug_14
TU231182 other downstream 397569 12472683 ~ 12473739 (+) False LOC113527673
XR_004579176.1 other downstream 1408187 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1408187 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4780656 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5502169 17577283 ~ 17577376 (+) True trnai-uau_6

Expression Profile