Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU231048 |
| length | 230 |
| lncRNA type | inter_gene |
| GC content | 0.49 |
| exon number | 1 |
| gene id | G195083 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 12371056 ~ 12371285 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU231012 | lncRNA | upstream | 121301 | 12249060 ~ 12249755 (+) | True | G195047 |
| TU230980 | lncRNA | upstream | 194937 | 12174394 ~ 12176119 (+) | True | G195016 |
| TU230966 | lncRNA | upstream | 225849 | 12145001 ~ 12145207 (+) | True | G195002 |
| TU230950 | lncRNA | upstream | 230836 | 12140012 ~ 12140220 (+) | True | G194989 |
| TU230784 | lncRNA | upstream | 307558 | 12062835 ~ 12063498 (+) | False | LOC113527436 |
| TU231049 | lncRNA | downstream | 2725 | 12374010 ~ 12374280 (+) | True | G195084 |
| XR_004579205.1 | lncRNA | downstream | 80608 | 12451893 ~ 12453678 (+) | True | LOC117598562 |
| TU231214 | lncRNA | downstream | 178849 | 12550134 ~ 12550360 (+) | True | G195225 |
| TU231292 | lncRNA | downstream | 271983 | 12643268 ~ 12643526 (+) | True | G195287 |
| TU231306 | lncRNA | downstream | 286820 | 12658105 ~ 12658323 (+) | True | G195301 |
| XM_026915883.2 | mRNA | upstream | 10413 | 12348960 ~ 12360643 (+) | True | tbx21 |
| XM_026915940.2 | mRNA | upstream | 53952 | 12269685 ~ 12317104 (+) | True | tbkbp1 |
| XM_026914596.2 | mRNA | upstream | 186018 | 12179023 ~ 12185038 (+) | True | cdk5r1b |
| XM_026915677.2 | mRNA | upstream | 228313 | 12141560 ~ 12142743 (+) | True | LOC113527660 |
| XM_026915249.2 | mRNA | upstream | 285697 | 12062808 ~ 12085359 (+) | False | LOC113527436 |
| XM_026915356.2 | mRNA | downstream | 7193 | 12378478 ~ 12383567 (+) | True | pnpo |
| XM_034309096.1 | mRNA | downstream | 7504 | 12378789 ~ 12383567 (+) | False | pnpo |
| XM_026914609.2 | mRNA | downstream | 19508 | 12390793 ~ 12398133 (+) | True | cdk5rap3 |
| XM_026914825.2 | mRNA | downstream | 36068 | 12407353 ~ 12415790 (+) | False | nfe2l1b |
| XM_026914827.2 | mRNA | downstream | 36068 | 12407353 ~ 12415790 (+) | False | nfe2l1b |
| trnaq-cug_16 | other | upstream | 1084788 | 11286197 ~ 11286268 (+) | True | trnaq-cug_16 |
| trnal-aag_8 | other | upstream | 2306430 | 10064545 ~ 10064626 (+) | True | trnal-aag_8 |
| XR_003402888.1 | other | upstream | 2735989 | 9634877 ~ 9635067 (+) | True | LOC113527805 |
| trnaq-cug_15 | other | upstream | 2857221 | 9513764 ~ 9513835 (+) | True | trnaq-cug_15 |
| trnaq-cug_14 | other | upstream | 2858425 | 9512560 ~ 9512631 (+) | True | trnaq-cug_14 |
| TU231182 | other | downstream | 101398 | 12472683 ~ 12473739 (+) | False | LOC113527673 |
| XR_004579176.1 | other | downstream | 1112016 | 13483301 ~ 13558513 (+) | False | tcf7l2 |
| XR_004579175.1 | other | downstream | 1112016 | 13483301 ~ 13558429 (+) | False | tcf7l2 |
| TU234137 | other | downstream | 4484485 | 16855770 ~ 16863495 (+) | False | anapc16 |
| trnai-uau_6 | other | downstream | 5205998 | 17577283 ~ 17577376 (+) | True | trnai-uau_6 |
