RNA id: XM_034309496.1


Basic Information

Item Value
RNA id XM_034309496.1
length 1004
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC113527673
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12472679 ~ 12473983 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAAGACAGTCCAATCGTTCTTGCCGGATATTTCCTCTTGCCAGAAGAACTTGAACCTGAACTGCAATGGCAGCAATTGTTACTGGTCTGATCCCCATCCTCCGCACTGCAGTGGACGCCACCACCACCTACAAAGGGCGCACCTTGTGGTTTGGCTTTCTCTGTATTCGCCTTGTAACACTTTTTGTGGCTGAAATGCCTTGGTTCAAATTGGACTCTGACTTCAGTTGCAATATCACCAAGGACAGCGTGTGCACTAGAGCCTGCTTCAACCAGCACTTTGACAAGCCTGTGGTAATGGCTTGGAACTATATCTTCATCCTCCTCATTCTGTCGGTCCTGCTCATGGAGCTCTTCACTGTCCACGTACGTTCGGTTTTCCAGAAGAAGAGCTCTAGAGAGAAGAATGGAGTGGAACTTGAATCTCTGGGCGAGCTGAAAAGCGCAAGTGACCCCAAAAACACAGCTGGGATGATGATCCTAGACATGCATGGAAGCAGAAACGCTGTGCTCTTCTACCTGTTCAGCGTTATGCTGCGGATTTTGGTTGAGTTTTGGTTTGTGTATGTTCTGCTTTATTGGAACTTGTCTAAACTAAACCAAGGGGTGTTCGTATGTAAGGGTAATATTAAAGGATGTCCAGATCAGGAGTGTTTGGTAAGGTCTACGGCAGAGAAATGCATGTCTATCTATGCTTTAGTGTCCATTTCTGTCCTGGTCATCATCAGCAGTTGTGTGTTCTGTGTCTACTTCATTGGCCACTACCTCTGTAACTGTTGTACCAAAGGACCCCACAATGTGGAAGTTCATGGTTTTCAAAGTAGGCTTTAGTTTCTCTGAACAACTGTGGTCTTCCAttcatgtctttctttttgtctttgttaaacattttcAATCCAGTGTTAATTTTGTGTAAAAGCTTTTGAATAGCATTGTTGAATTTTGCTGTCTTTTACTGAGTTGTGAAATGTGTGGCAATAAAGGGTGTTACACTTTAATCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579205.1 lncRNA upstream 19013 12451893 ~ 12453678 (+) True LOC117598562
TU231049 lncRNA upstream 98411 12374010 ~ 12374280 (+) True G195084
TU231048 lncRNA upstream 101406 12371056 ~ 12371285 (+) True G195083
TU231012 lncRNA upstream 222936 12249060 ~ 12249755 (+) True G195047
TU230980 lncRNA upstream 296572 12174394 ~ 12176119 (+) True G195016
TU231214 lncRNA downstream 76151 12550134 ~ 12550360 (+) True G195225
TU231292 lncRNA downstream 169285 12643268 ~ 12643526 (+) True G195287
TU231306 lncRNA downstream 184122 12658105 ~ 12658323 (+) True G195301
TU231526 lncRNA downstream 370342 12844325 ~ 12844561 (+) True G195512
TU231613 lncRNA downstream 484957 12958940 ~ 12963243 (+) False ablim1b
XM_034309502.1 mRNA upstream 4507 12466585 ~ 12468184 (+) True LOC117598642
XM_026915683.2 mRNA upstream 6257 12462862 ~ 12466434 (+) False znf668
XM_034309353.1 mRNA upstream 6257 12463111 ~ 12466434 (+) True znf668
XM_026915424.2 mRNA upstream 25695 12434535 ~ 12446996 (+) False rnf40
XM_034309533.1 mRNA downstream 10151 12484134 ~ 12487553 (+) True si:rp71-1c10.8
XM_026914610.2 mRNA downstream 10151 12484134 ~ 12487553 (+) False si:rp71-1c10.8
XM_034309464.1 mRNA downstream 21685 12495668 ~ 12502869 (+) True valopb
XM_026914694.2 mRNA downstream 48952 12522935 ~ 12544716 (+) True gabrz
XM_026914691.2 mRNA downstream 89514 12563497 ~ 12575544 (+) True adgra1a
trnaq-cug_16 other upstream 1186423 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2408065 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 2837624 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 2958856 9513764 ~ 9513835 (+) True trnaq-cug_15
trnaq-cug_14 other upstream 2960060 9512560 ~ 9512631 (+) True trnaq-cug_14
XR_004579176.1 other downstream 1009318 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 1009318 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 4381787 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 5103300 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 5681168 18155151 ~ 18158629 (+) False pde6gb

Expression Profile