RNA id: XM_026915724.2


Basic Information

Item Value
RNA id XM_026915724.2
length 4346
RNA type mRNA
GC content 0.49
exon number 29
gene id ablim1b
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 12958935 ~ 13021995 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTCACACAGAGCAGCTGCAACCTGGTTATTTCAGCACAGCGACGGCAGAGTcctcaaacacatacacactctcacgcacacacacactggcagaaAAGGGGAAGGCTCAAGAAACGGAGACCAAATGAGCAGTCACACAGTGCCGACTGGCTGCCTAGTTTGACAGGActagcactctctctctctttctctctctctgatcctctgccttcctttatttctttttttatattggctttctctttctctctctctctctctctctgtctttctcctttgGACTGAGAGGTAGAGAGTGCAGGAAGACCCATCGAAGGCagacagcagcaacagcagcagaagCGTCTCTCCTCTCTCAAGCCCCAGAAGGAGCCAATGGTCATGGTGAAGGAGAAAGTGGCCCATCCTCAGGAAGCACACCGGCCCCCGGAGAAAGTGGTCATCCAGTGTTACAAATGCGGGGAGCCATGCAAGGGGGAGGTGCTGCGCGTGCAGAGCAAGCATTTCCACATCAAATGCTTCACCTGCAAAGtgtgtgGCTGCGACCTGGCCCAAGGTGGTTTCTTCATGAAGAACGGTGAGTATCTGTGCACGGTGGACTACCAAAGGCTGCATGGAACACGCTGCCATGGCTGTGGGAACTTTGTTGAAGGAGAGGTGGTGACGGCGCTCGGGAAGACCTACCACCCCACCTGCTTCGTCTGCACCATCTGCAAACGGCCATTTCCTGCTGGAGACCGTGTCACCTTCAATGGAAAGGACTGTCTCTGCCAGAGCTGCATCCAGCCAATGTCTCCTCCTCCCAAAGACATCAGTGCTTCCAGCAacTGTGCAGGCTGTGGCAGGGACATTAAAAATGGACAGGCTCTGCTAGCTTTGGACAGACAGTGGCATCTCGGCTGCTTCAAGTGCAAGGCCTGCGGCAAAGTGCTGAGTGGCGAGTACATCAGCAAGGATGGTGCACCATACTGCGAGAGAGACTACCAGATCCACTTTGGTGTGCAGTGTGAAGCCTGTCATCAGTATATAACAGGGAGGGTTCTGGAGGCAGGCGATAAACACTACCACCCCAGCTGTGCACGATGCAGCCGGTGCAACCAGATGTTCACAGAGGGGGAGGAGATGTACCTGCAAGGCTCTACAGTGTGGCATCCAGACTGTAAGAGCAACATCAAAGTAGAAGAGAAGTACAGGGAAGCAGGACAGCGACCTGGCAGAAAGCCCCGTCCTTTTGATATCTTTTTGCCCCTGTCTAAGTGTGAGTCTCAGTGTAAGACGAAGGGCCAGGGTGGCTCTGCTCGAGGCGTGCGTCCCCTGCGCAGGACGGAGcttctccctccctctgtaacCTCACTGCACCAATCAGAAAGGCAGCCCACAAGGTCTTCGTCGGAGAGTATCTGTTCTCGGCCGGGTTCCAGCATCCCTGGCTCTCCTGGTCACACCATCTATGCAAAAGTAGACAATGAGATCATTGATTACAAGGACCTAGCAGCCATCCCCCGAGTCAAGGCCATTTATGACATAGAGCGTCCAGACATGATATCCTACGAGTCTCTGCACTCCACCTCCTCTACCCTGGAGAGACAGGGCAGACAAAGCCCTGGAGAGTGCCAGACTACTACAGGTGACCAATCCCCCATCAGAGGCCATAttaaaACCATGCCACAAGACCCTTCCCCCATGTCAGCTGAGACTTCACCAAGAACACTGTCTCCTACCCCATCTGCTGAGGGCTGTTATGACATTCGAGAACGAATCATGCAACGATCCACCAGCCAGGGCTCCATCGGCTCCCCGATGTACAGCCGACACAACTACACACCTACACTGTCTAAGACACCGCAGCACTTCCACAGACCAGGAATGCTGAAGCTCTGCTCCTCTTTGCGCTCTAGCAACAGTGACAACCGTCCTACTTCCCCTTTCCGACATCACTTCCTACCCCATAACAAAGATTCTTTCTGCATAGGCACTGAGCCGTCGAGTGGCCGGAGTTCTCCCTTGTCCTCTCGCTCGGCCACCCCGACCCTCTGTCTGACCCCTAAACATTTCCACATCCCAGACCAAGGCATGAACATGTACAGAAAGCCACCAATCTACAAACAACATGATTCAGCTGCCCTCGCAGCCCAAAGCAAGTTTGCTGGCGACATCATCAAATCTTCCAAGTTCCCTGCTGCTCAAGCTCCCCGGCCGGATGAAACAGCAAAGATTGAGACTGACTACTGGCCCTGCCCTCCCTCCCTTGCAGCCCTAGGTTCAGATATGAGGAGTCGCTCAcgagatgaagaggaggaggaacaaTTAAAACGAAGACAACTCCAAGAAGATCATCTTAGCAAGATCCAGTCTGGTCTTGGAAAGCTCATTTTgaaggaggagatggagaaggaaatgaacagagagagatatgCTCGCAGTGTGGCAGCCCAGCGGTACGAGCCTCAGCACTCCAACTTCACCGCAGatcCCAACTCTCCCACGTCTAAAACCTCTTCACTGCCAGGATATGGACGCAACGGCCTTCTTCGGTCAACAGAATTCTCTCAGTATAACAGTTACGGGGATGTGTGTGGAGGGCAGAGAGATTTCAAGCTCGTCCACGATGGCCAGGTTCCCCTAACCAGAATGGACAGGGGAATGTCAATGCCTAACATGTTGGACCATAAAGTGTATCCCTATGAAATGCTCACTGTCACCAACAGAGGGCGTACTAAGCTCCCAAAGGACGTGGACAGGACGAGACTGGAGCGTCACCTGGCCCCTGAAGTATTCTTTGATGTCTTTGGAATGGAGATCCAAGAGTTTGACAAACTTCCTCTGTGGAAGCGCaatgatatgaagaagaaggCCAAGTTGTTCTAGCCAAGACATTGTGCATGTTTTAATTTATCAGTCACTccaataataatgtattatagctgtagttttctgatttgcttttcctttattcccttttctttttcttttttttttttgtttgcttctaACAGTCTGATACACATGGACATAAATTATCTACTTTTTTGATTCAAAACAAAGAccacaccttttttttccccaaggcAGAGTTTTCGTTTGAGTAGGTTTAAAGAGATCTGCGATCTAACCACTCAGCAGAGACCAGAGGAGTGAGGACTGGTTATTATCTCTCACATTTAACTCACGTGAAACCCGACTTCCGAGCAAAGCTTTCTCCCCTTGCACTCCTTCCTGCTCTCTCATAAAACAGGACTGTAATCTTTTTTGGGGGGAAAGTGGTAGGGGGCTGAAGGCTATCTGCAGGGTTCTTCCTCTAAACAGGCTATTAAGGTGATGGAAGTGGAGGAGCTCCAGCAGCCCCCTGCTGCTGTGGCCCTAACAAGGGCCTTGATGTTTCTTAATGGGGGGAAGTTAGAGCTACTGTATGTGACTGAAGATAAGAGGTCTGGGCTCCACCTGTGGCGGGGAAGGCCTTAAAAGACCATCCGGGCTTCTGGAACATATTAGAACCTGAGGTGACAGAAAGACGCATCTGCTGTAATGCTCCTCCCTGCCATCTCCTCTCAATCGTCAAGCTAATACCAAAATGGCTTAGGATGATTTCTCTAGAATCAAAATCCTTTTGAGTTCAGTGCTCTTTGGTAGCTCCCTTTTAAGCCCCGTTacctatttttaatttaaaactaatgGAACTATTGCATTTGACAGACAAGGTGCTGGTGAAATGTTCGGAAATGAAATCCGACCTCCTGCTTCCTCTTAAAAAGAGTTGCGAGTTTGTTCACCACTAGAGGTCAGGCTTGTGTCATTAGGGACAGTTGAGGCACCCCCCATCTTACTTTTCAGACCCCTCTGTCATTGGAATCTGACAATCCTCTCCTTTTGACCACTATCTAAGCTGCAATATATGTTTTAGCAACATATCACTTTGACTAAAGTTGCATTTGAAAAGAAACACCTTTGATATTACTGCATTTTATAAAGCTGAGGTATTTCAAACTGCCACTGTGTTGCTGGGAGACTGATGGAGCCGTAGCCATAGCATCTGTGTCACGAATAGGTTTGATAGCAGGGCCATATCTGTCATTCCGTACAAAGCTGCCAGACAGTGTTGTTCCCATATCACTGGATGTGCTTGCAGTAGTGTTGTTGGCTGCTGGTGACTGTTAATTCCCAGCAGTTTCCTGTGTTATCTGCAGGGTTAAGGACCGAGGACtaggaaatagaaaaaaaatatggggTTTATATGACACAACAAAAATGTGATGAGAATATGGTGATGAAATTCCAGTTTTGATACCCATCATGATAATGATGTAAGAACTCAAATGAGTAATAAAACTCTGCTTCAGATATTTA

Function

GO: NA

KEGG:

id description
K07520 ABLIM; actin-binding LIM protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231613 lncRNA upstream 15793 12958940 ~ 12963243 (+) False ablim1b
TU231526 lncRNA upstream 134475 12844325 ~ 12844561 (+) True G195512
TU231306 lncRNA upstream 320713 12658105 ~ 12658323 (+) True G195301
TU231292 lncRNA upstream 335510 12643268 ~ 12643526 (+) True G195287
TU231214 lncRNA upstream 428676 12550134 ~ 12550360 (+) True G195225
XR_003402861.2 lncRNA downstream 41869 13063864 ~ 13066622 (+) True LOC113527319
TU231926 lncRNA downstream 444770 13466765 ~ 13466983 (+) True G195839
TU231948 lncRNA downstream 492681 13514676 ~ 13517886 (+) True G195847
TU231960 lncRNA downstream 596669 13618664 ~ 13618939 (+) True G195857
TU232108 lncRNA downstream 671720 13693715 ~ 13695761 (+) True G195994
XM_026914748.2 mRNA upstream 141653 12811647 ~ 12837383 (+) True gfra1b
XM_026915462.2 mRNA upstream 363818 12596373 ~ 12615218 (+) True bms1
XM_026915779.2 mRNA upstream 382814 12594495 ~ 12596222 (+) True mxtx2
XM_026914693.2 mRNA upstream 403492 12571278 ~ 12575544 (+) False adgra1a
XM_026914981.2 mRNA downstream 3636 13025631 ~ 13056775 (+) True afap1l2
XM_026914892.2 mRNA downstream 69191 13091186 ~ 13113005 (+) True ccdc186
XM_034309494.1 mRNA downstream 123885 13145880 ~ 13155997 (+) True dclre1a
XM_026915026.2 mRNA downstream 145091 13167086 ~ 13177922 (+) True LOC113527338
XM_026915034.2 mRNA downstream 171029 13193024 ~ 13195130 (+) True si:ch211-28p3.4
TU231182 other upstream 505297 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 1692768 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 2914410 10064545 ~ 10064626 (+) True trnal-aag_8
XR_003402888.1 other upstream 3343969 9634877 ~ 9635067 (+) True LOC113527805
trnaq-cug_15 other upstream 3465201 9513764 ~ 9513835 (+) True trnaq-cug_15
XR_004579176.1 other downstream 461306 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other downstream 461306 13483301 ~ 13558429 (+) False tcf7l2
TU234137 other downstream 3833775 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 4555288 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 5133156 18155151 ~ 18158629 (+) False pde6gb