RNA id: XM_026914595.2


Basic Information

Item Value
RNA id XM_026914595.2
length 2095
RNA type mRNA
GC content 0.45
exon number 7
gene id tha1
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14013573 ~ 14034143 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGAACACggcagacctggcaacccagGTTATCGATGATTCATGCTCCATTGTGCATGTCTGGATTTACAAACAGTTTATAGTGAACGATTATCGAATGCAGCAACACAAAGTTGAAGTTTTTAGTAAAGAGTAGGTTTTATTCTGAAACTTTGCTAACAAGATGTCCGTTTCAGTTCGGTCACTTGTGCGTTGTGTGAAGTTCCGCTGGGTCTCAGAGCGAATATACAGCGGGCATATGCGTGTAGCGGATCAGGTGAGGCTTTACCGCGCCGGCAGCGCGGCGGCTCGCGGCTCAGGCGCCTGGCACACGGTGGACCTGCGCAGTGACACGGTGACTGAGCCGGGACAAGCCATGCGCAGCGCCATGGCACAGGCCAGGGTCGGAGATGATGTGTTCGGTGAAGACCCCACCGTTAATGaactGCAGACAGTGGCGGCTGATATGTTTGGCATGGAGGCAGCTTTGTTTGTACCCACAGGAACCATGAGCAATTTGATTGCAGtcatGGTGCACTGCAGAGAGAGGGGCGATGAGATGATAGTGGGGGATCTCTCTCATCTGCACATCTATGAGCAGGGAGGGAGTGCACAGCTTGCTGGTGTACACTCCACCACACTCACGACTCTGGCTGATGGAACGTTTGATCTGGAGCAGCTGGAATCAAAGATCCGCCATGACTATCCTGATGCGCATTACCCCCGCTCACGCCTGGTGTGtgtagaaaacacacacaacatcatgGGTGGACGCGTTCTCCCTGTCTCCTTCCTGCAGCAGCTGCGCTCTATAGCAGATAAGTATGGACTTGCTGTGCATATGGATGGTGCAAGGCTGATGAATGCAGCAGTGGCACTGGGTGTGCATCCCTCTGCTTTACTCAAACACTGCCACacggtcagtgtgtgtctgtctaagGGATTGGGAGCACCTGCTGGTACCATGCTTGCTGGGTCTAAAGAGTTCATCCAGAGAGCAGTGCGTGCTCGTAAAGCCCTGGGAGGTGGAATGCGCCAGTCAGGTATTTTAGCAGCAGCTGGAAAGATTGCCCTGTTGGACATGATGGCTAGACTAGAGGAGGACCACAGGAATGCCAGGACCTTTGCCAGAGCTTTGACAGAATGTGATCCTCCTTTGTACCATGTGGACTTGGCTTCTGTTGAAACCAACATCGTGCGTTTCTGTTTGCGAGTTCCTGGACTGAGTCCGTCTCATTTCTGTGAGCTGATGGAGGAGGTGAGCGAGGAGGAGATTGACGCTCTGGACCAGGGTGTACGTGTGCTCATGTTCCCTCACGTCAGAGGAACAGTGAGAGCTGTGTGGCACCTCGGCATCAGCGAGGAGGACACTCAGCTAGCTATAAAGAAGGCCCAGTTTGTGGCCCAACAATTTAGGATAAAATCAGCAAGAGACAGATGAAAGCAAGGGAAGAATCTtcaatcatcatcattgtcCCTTCAATTAAGAAGTGCTATGAAGCATTCTGAACCAAATTAGCAAACATTTGTATTACACACCATTTGTATTAAACTCTATTAAATCAATTACATTTCactagaataataataatttatatttcgATTGGAATAGTGATATATAAAATGAAGGTTTATATAAATCTTTCAGTCTAATTTATAGATACAGCAATTCATGTGGATTTGAAATAATACAGAATTTTACACATTGTCTCATTGGCCTATATAAATAAGcaattgtttatatataaaaccatatTGTTTGGTTGCTAGATAGCATTTCAACACATGCTAACTTGTTAAAGACATCTGAGGATGGAATAATGTCATTTGAGACTTAATACCCAATTCtaatataatgtacattattaCATACAGTAATTTTTTAACGTAACAGCGACATATGGTTATTACTGTAAGCTTCAAATTATATTAGTCCATGTTTTATataagtctgagaccactagtgaaaatgcttctattttgcgtTCTTTTCTAATTTCAAAGAAGcgttgaaatatttacatgatttacagcatttcttagtatttggtacgttCCATTTTTGCGTaatgagctggcatggactccacaagtttgtgcaaaaccctATGATACA

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01620 ltaE; threonine aldolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232344 lncRNA upstream 6329 14013573 ~ 14016247 (+) False tha1
TU232108 lncRNA upstream 326815 13693715 ~ 13695761 (+) True G195994
TU231960 lncRNA upstream 403637 13618664 ~ 13618939 (+) True G195857
TU231948 lncRNA upstream 504690 13514676 ~ 13517886 (+) True G195847
TU231926 lncRNA upstream 555593 13466765 ~ 13466983 (+) True G195839
TU232423 lncRNA downstream 92375 14126518 ~ 14127031 (+) True G196265
TU232451 lncRNA downstream 129428 14163571 ~ 14166015 (+) True G196289
TU232454 lncRNA downstream 135165 14169308 ~ 14169812 (+) True G196292
TU232453 lncRNA downstream 139147 14173290 ~ 14173773 (+) True G196291
TU232456 lncRNA downstream 156696 14190839 ~ 14191913 (+) True G196294
XM_026915894.2 mRNA upstream 26407 13992223 ~ 13996169 (+) True socs3b
XM_034309192.1 mRNA upstream 47983 13949217 ~ 13974593 (+) False LOC113527468
XM_026915931.2 mRNA downstream 174756 14208899 ~ 14233287 (+) True slc38a10
XM_026915204.2 mRNA downstream 203249 14237392 ~ 14246149 (+) True tepsin
XM_026915135.2 mRNA downstream 216322 14250465 ~ 14253655 (+) True si:dkey-21c1.4
XM_034309504.1 mRNA downstream 216322 14250465 ~ 14253655 (+) False si:dkey-21c1.4
XM_034309505.1 mRNA downstream 216322 14250465 ~ 14253655 (+) False si:dkey-21c1.4
XR_004579176.1 other upstream 464063 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 464147 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1548837 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2736308 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 3957950 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2821627 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3543140 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 4121008 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4407743 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4771942 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile