RNA id: XM_034309282.1


Basic Information

Item Value
RNA id XM_034309282.1
length 3577
RNA type mRNA
GC content 0.42
exon number 9
gene id qki2
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14287359 ~ 14324281 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGATGGTCACATGACCGCGGGCGTTaggaaagcagcagcagcagcagagtcTATTGAATACCGACACAGCAAGCGGAGAAGAGTTTCCTCAGCTCCAGATCTAGCCTTCAAACTTCACACAGCTCGCAGGATCTCTCTTATAAACCGCTACTCCAGATTATCTTGCTAAGAAGTGGAGGTCCCGACAGGTCGAATGGCCTGGAAATAGCGTTACTCTGACGGCTACAGTCTCTGAGAGTAAACAAATCTGAGCGGTCATGCGGGAGTCCGGACAGTGTGCGGAGCTTTTCTGACCTTATAAATCACGCACACTAGTGATTTAGCTTTCTGCGTGTTTCAgaagtctgtttgtttgttgaagAAATAGTTTTGAAAGCGAGACGCTCTGAAAGTCTTCTGGCTCGAAGCGGGACTTCGCTGGAGAAGAGAGGAGTGAAGAGAGGAGTGAAGAGaggagtgaagtgaagtgaagtgaagactCAGCCTGCTGGAGGAGTCTGCTGGAGCCTGTTCTTCTCCTCATAActcatttttctgaattttaaaGCAGACGTTTTTAAATATGGTGGGGGAAATGGAAACAAAAGAGAAGCCCAAGCCGAGTCCTGACTATCTCATGCAGCTCATGAACGACAAGAAGCTGATGAGCAGCCTTCCTAACTTCTGCGGGATTTTCAACCATCTCGAGCGGCTTCTGGACGAAGAGATTGGCCGGGTACGGAAGGACATGTACAATGACACACTGAACAGTAGTACAGACAAAAGGACATCGGAGCTCCCAGACGCCGTGGGGCCAATTGCACAGCTCCAGGAGAAACTTTATGTGCCTGTAAAAGAATATCCAGACTTCAACTTTGTGGGGAGAATCCTCGGTCCACGTGGGCTCACTGCCAAACAGCTGGAGGCTGAGACAGGCTGCAAGATAATGGTGCGAGGCAAAGGCTCCATGAGAGACAAGAAGAAGGAGGAGCAGAACCGTGGAAAGCCCAACTGGGAGCATCTGAACGAGGACCTGCACGTGCTCATCACAGTTGAAGACTCGCAGAACCGTGCTGAGATAAAACTCAAGAGAGCCGTGGAGGAAGTTAAGAAGCTGCTTGTCCCTGCAgCTGAAGGTGAAGACAACTTGAAAAAGATGCAGCTGATGGAGCTGGCAATTCTCAACGGCACATACCGAGACGCCAATATCAAATCACCCTTGGCTTTCTCTTTGGCTGCCAGTGCCCAGGCTCCTCGCATCATCACTGGCCCCTCCCCAGTGATGCCCACTGCAGCCCTGCGTACTCCTGCCCCTGCTGCACCCACCCTCATGCCTCTCATCCGACAGCTCCAGACCTCTGCTATCATGCCTGCTGGCACCCCTCACCCCACTGCCACCCTGGTGCCCCAGACCCCCGAGTCGGGTATTTTCTACACCCCATACGAGTATCCCTATACTCTGGCCCCTGCTACCTCTATCCTTGAGTATCCCATTGACTCCAGTGGTGTATTAGGTATGGCTTTCCCCACAAAAGGTGCAGTGACTACTAAAGTACGAAGGCAGGATATGCGCGTCCATCCTTACCAAAGGGTAGTGACCGCAGAAAGAGCTGCCACCGGCAACTAACCAATGACCCTCTGAGCTCTCAACTCTTCACCCAATGATgacctgaccattgcctgtgtgCTGACCAGTTCTCTGGCTCTCGTCCTTCACTTGTCTCGTACTCGCAGCCTGCTGGTGAGCAACGAATCAGATTTAATTCACTTAATACAACACAGCAGTGACAGTCCTCCTGAACTCAGCCGTCCATCTGAGGACCTTCATGGTCAGGTGATCTAGTCTCCACAGCCTGCACTGAAGCAACATAAAAGCAATAATATGGTCTAGAACACCATGTACAAACTCATCACCAGTTTCACTCCTAGACGTTCAGATATACAACAGTTCTCATAATAGAATATAGAGATTGAGCATTAAGCTGGCACTTTGATTAAGTTGAGGAGACACACAGGACTGAAGCTTTGTGGCTGTGTAATGTGTTCACGTGGATCAGCATGTTCATGTGCGAGAGAGTATGAAGATGAGCAGGGGAAATCTACAAAGGTTTTTGAAGATAATTCAAAGTTAAAACGTGCATTGAGAAAGTAAAAGCCATTCTTGCCCATCAGCATCTTGAACTCAAAtagaataaaatgcatttataaataagaataattttaCAGGCATTAAATACTAGCTCATGCATTTTTGATATGAGGGTGCTGCAGGTGAAATTACTCTATTTTTcacaatatttctttttttgtacaaaacaaCAGTATGTGATgtcaaatgtacaaaatgaacaaagaaaaaaagatttatttctttacaaaatgGAAAGATTTTAGAGACCAAAATGtcttttataacttttaaaGTGCCTTATTTTACATATGATCATTGTGGATGAATGAGATCCATCACTGTTTTTGACAACATATCGATTATAACCAATTCCTCCATTTCTTTATTAGTAACAGAATCAATGCAAAACCACACCCAGCAAATTCGACAtgttttgtttagttgttttaacatttatgcaTAGACATTATTTCTAACTCTGATTTACAGTTGTGCCATGTGTTAACGTGTTATTGCATATAGTGGATATTGGTTACTTTGTGATACTGACTCTGGTTCAGCAGAAATGTCTGTCTGCTCCACCACTATGAAGCTCATGTCAAAACAGCATTTATatatcaacaaaaaaaatcctgaaactGTTACAGAGAAggttttagttattattaagtCACTGGTTCTTTGAATTAGCAGTGTAAGATGGATTCAGCAAGTGTTGTAGAAAgtgattttcttttcaattttacACTATTAAGAAGTgaactgtgaaataaaacaaatggaaTCTTAAAGGTAGAACTCTATGCAATTGAGTTGCTCTTGCCAAGTTACAAGAGGTTTTCCAGCAGGTCTTCCAGATTACAGAGCCAAGCATTAACGAGGAAATGATTCGATTAGAAACTCAATCGAGAATATGgagattgctttttttttatttaatttgtaacaTGATTAACAAGAATAATCTTTCTTATTTTGGTTGCTATAACTGGATCTTCAGTATCTCTTTTCTGTTACTTTGTATGTAGTGCCATATATTCAGTAGTTTTTAAAGGTCTAGAAATTCTATTGTTAtgtcttatttcattttttgacACGTGTGAATCAGCacaggaaaatattttgaaacacAACAAACTTCTCAACTTCTCAACTCAATTAACTTCAGAACTGCAGTTCTGAATTCTAAGGTGTTTCCCTTGGTTTGacctgttttatttgtttttatgagCAGTATTATAAGATTGTGtaaatggcagtgtgtgtgtgagatcgtgtgtgtgagagtgtgtgtttgattccGTGAATATGATCTACACCAGTCAACTGCACCTCCCTTTTTTTAAGCAGTCTTGTGTATTGCATTGGAAATGTCTGGTCCTATTTATAACCATTGTAACaactataaaatgtatttttctatcACATTTTGTATGTATGAAATAACATTAAATCATGTTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579315.1 lncRNA upstream 8465 14280234 ~ 14287826 (+) True LOC117598693
TU232472 lncRNA upstream 31905 14264176 ~ 14264386 (+) True G196307
TU232456 lncRNA upstream 104378 14190839 ~ 14191913 (+) True G196294
TU232453 lncRNA upstream 122518 14173290 ~ 14173773 (+) True G196291
TU232454 lncRNA upstream 126479 14169308 ~ 14169812 (+) True G196292
TU232479 lncRNA downstream 3305 14327102 ~ 14327360 (+) True G196312
TU232482 lncRNA downstream 14166 14337963 ~ 14338270 (+) True G196315
TU232527 lncRNA downstream 200108 14523905 ~ 14526083 (+) True G196360
TU232554 lncRNA downstream 254109 14577906 ~ 14578458 (+) True G196378
TU232565 lncRNA downstream 273981 14597778 ~ 14601439 (+) True G196386
XM_026915700.2 mRNA upstream 24767 14268676 ~ 14271524 (+) True prph2a
XM_026915426.2 mRNA upstream 29697 14265346 ~ 14266594 (+) True tbcc
XM_026915135.2 mRNA upstream 42636 14250465 ~ 14253655 (+) True si:dkey-21c1.4
XM_026914571.2 mRNA downstream 6622 14330419 ~ 14334549 (+) True timm23a
XM_026914573.2 mRNA downstream 26036 14349833 ~ 14354606 (+) True syt15
XM_026914574.2 mRNA downstream 26036 14349833 ~ 14354606 (+) False syt15
XM_026914486.2 mRNA downstream 45913 14369710 ~ 14391752 (+) True si:ch73-127m5.1
XM_034309568.1 mRNA downstream 70917 14394714 ~ 14445832 (+) True ndst2b
XR_004579176.1 other upstream 737778 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 737862 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1822552 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 3010023 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 4231665 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2531973 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3253486 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 3831354 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4118089 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4482288 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile