RNA id: TU232451


Basic Information

Item Value
RNA id TU232451
length 2445
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G196289
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14163571 ~ 14166015 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTCTTCCCCTCTGGCTCTCTTCTGCTCACTTGTCTGCCCTCTACCTGGTTACTCTCTGTCTCATTACCTGACTATAAGCTCTTCTCTtgctccactttttttttcccctctctttcaCTTTGCTTTCTCCTTCCCTTTTCTCTCTGAGCTGTGTTCTGAGTAGGTTGAGCACTGAGGCCTGGTTTAATCCTGCACAAACCACTATGGCTCTCAGTCTGGAGTCCCATGGCCCAGAGAGGGATTACAGCAGGGAATAAGACTCCACTCCACTACCCtgcacacactgactcactgaagtCCTTCAGTTTAATATACTGAGGTTAGGGATGGAACAATAATCATAATACTGTAAAACCATCGGTTATGACAAGTCATATGATAGTATTTCCATAACAATTGGTGCgttgtcacatttttttccacttaaacAGTAACTAAATTCAACAGTTTGCTTGAAAGCATGAAAAGCACGCACCCACCCCAACCCCCGGTCTTTGACCATTCTAAAGTTATAAAATTACAACAATTCTGATAGTGTAGAAGACAGACTGCAACAGTTAATGAAACGGACTTAACATAACAAGAACAAATTGAGACAATTAACCATCAAAAGATATTTCTcttttgaaaatataaatggGCTTAAAATTGTACAATGTTTATGAAGGTCCTCTGTTGTGCTATGTTTGCTGAAGTGTTGTGAACAACCTCTTTTCAATATTCACTGAGCTGCTTGTGAATATGTGTCATAATAAGGTGgggaaatgaaggaaaaaaagtcTTGGCTTTTTTAAAGTCTTGAACATTACAATGGCTCTAGTTGTACTATTATTACCTGTCTTCCATAGAAAAAACATAATACCAAAATATTGCAGTCATTTTCTTAGGgtttactgtgtttttaaacAATCAAAATTGTGACAGCTGTAATTGCTGTGAGTCCTGTGAGAGGGAAAGTGGCATAATCCAAAACATTACAATCAGCCGTATTAAAAATGGACTGTCTTTCTGAAATACAGTATGCGATACTTTCTGCcatacaaacacaacacaaaaagacagacagacacacacacacacacaaagagacatacacactgtattaaTAGGGTTCTGCATTCTTGTTCACTCTAACTCACAGTCATTATGTTGCCATGCTGATGCTCACTGAACAAGTTTGTAGCTTAACTGTGTTGACTGGATTCATTACTGGGAACCTCATACGTGCACCTGGGCCACATCAACGGCCCTGCTTCAAAGCACTGATTTAAAAGTCACTGAATGGGTCAAGGTTGAGTGGACAAAATAGTGGCCATAAAatagtaccaaaaaaaaaaaaggaataacaaATGATGTCACATTTCCCTGCACTGTGAAAAAagatactttttaaaatcttaacgTAAAACTCATTTACAATGGAAGCTTAATGACAGCTGTTTGGCAGCCAGTAGACTGAAAGAAATTTCTAAGTAGCcaaaatgctgctttttttatatatataaaatagattgCATGCTATTATTAAGCAGAGTTAAGACTGATACTGTATCGAGCACGGTCATCAACGTGACAGGAATGTTTCTTCTACAAAAGCCTGACTGAGACACAGTCAGATAAGAGGCATGCTACCAGtgcaacaaaacaaatatattcttgactaagaaattaaaaaggtttaaaaaaaaaatcagagaaagaCAATAAGAGAAATGAAAGCAAGTGGGGAAAAACACAAGGAGCAATCAAAGTGTAGGTGAGAgacaaaaggagaaaaacagtGACAACAGTTTTGTTTTAATCAGAGAACATGAGAATATGCGGATGTGCAGCAATGGAGTAACAGTTGTCCCTCTCAAATTAAAGCGAGTGGCTGTAAGAGAGAGTGAGGCAGAAAGGCTGTCCCACGAGACTGATTAATACTGAATTCCTGATGCTAATctttgttttgcacttttttctttaCGGGTGTCgaaactgacacacactcaagaAGCATGCCttatgtatatttaatgaaGGTTCTGCATTCGTTTAGCGCTTTCGTCTCACTGTGTGGCATGCCACATGCTTGCCTTCTTGTGAAGCCGTGCTGCTCCTTATATACCCTCATCTACATGTACAACTACCTTTATATGTTTTACACTCATTACTTTGTAAGAACACACTGTAAATGATGTCTCATAGGTCTGGATTTTGTTCCGTTCCTCTATCCACAGAACGGTGATGTGATTAAAaataagtgagagagagagagagagagagcgagagagagataccAGGTGTAGATGTCGCATCTTGTAGGACAGGTTAGGTTTTGGATAACAGGGCAGGAAGCCTCAATGTCTGACATCATGTCTGCACCTGAGTGTGATGTCATCACaatgcaaaaacacaaacaacactaAGTATAACCCTTATAATCTTAGCaaagtcaaacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232423 lncRNA upstream 36540 14126518 ~ 14127031 (+) True G196265
TU232348 lncRNA upstream 119639 14023587 ~ 14043932 (+) True G196202
TU232344 lncRNA upstream 147324 14013573 ~ 14016247 (+) False tha1
TU232108 lncRNA upstream 467810 13693715 ~ 13695761 (+) True G195994
TU231960 lncRNA upstream 544632 13618664 ~ 13618939 (+) True G195857
TU232454 lncRNA downstream 3293 14169308 ~ 14169812 (+) True G196292
TU232453 lncRNA downstream 7275 14173290 ~ 14173773 (+) True G196291
TU232456 lncRNA downstream 24824 14190839 ~ 14191913 (+) True G196294
TU232472 lncRNA downstream 98161 14264176 ~ 14264386 (+) True G196307
XR_004579315.1 lncRNA downstream 114219 14280234 ~ 14287826 (+) True LOC117598693
XM_034309653.1 mRNA upstream 129428 14013612 ~ 14034143 (+) False tha1
XM_026914595.2 mRNA upstream 129428 14022576 ~ 14034143 (+) True tha1
XM_026915894.2 mRNA upstream 167402 13992223 ~ 13996169 (+) True socs3b
XM_026915313.2 mRNA upstream 188978 13951793 ~ 13974593 (+) False LOC113527468
XM_026915931.2 mRNA downstream 42884 14208899 ~ 14233287 (+) True slc38a10
XM_026915204.2 mRNA downstream 71377 14237392 ~ 14246149 (+) True tepsin
XM_026915135.2 mRNA downstream 84450 14250465 ~ 14253655 (+) True si:dkey-21c1.4
XM_034309504.1 mRNA downstream 84450 14250465 ~ 14253655 (+) False si:dkey-21c1.4
XM_034309505.1 mRNA downstream 84450 14250465 ~ 14253655 (+) False si:dkey-21c1.4
XR_004579176.1 other upstream 605058 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 605142 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1689832 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 2877303 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 4098945 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2689755 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3411268 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 3989136 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4275871 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4640070 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile