RNA id: TU232479


Basic Information

Item Value
RNA id TU232479
length 259
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G196312
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14327102 ~ 14327360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAcatgcagctataaacacatgAAAGAAGATGGAGCAGCAGGGTGGTGTTGCATGCTGGTCTATGTCCCATTCCCCTCTGTATACTTCTccactcctcttcctctcctcgtCTTCCTGCCCTTCCTGCCCACTCTCAGGAGGGGGAATCAGCAGTCTGGCTCCAGTCTGGACCCCCACTCTGGCTCCTCAGTCCTGGACACTACCCAAACCTAGTGGGAGACAAGCGACTGCAGTCAGCATCCAATAGTCCAGAGGAG

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232442 lncRNA upstream 2821 14287359 ~ 14324281 (+) True qki2
XR_004579315.1 lncRNA upstream 39276 14280234 ~ 14287826 (+) True LOC117598693
TU232472 lncRNA upstream 62716 14264176 ~ 14264386 (+) True G196307
TU232456 lncRNA upstream 135189 14190839 ~ 14191913 (+) True G196294
TU232453 lncRNA upstream 153329 14173290 ~ 14173773 (+) True G196291
TU232482 lncRNA downstream 10603 14337963 ~ 14338270 (+) True G196315
TU232527 lncRNA downstream 196545 14523905 ~ 14526083 (+) True G196360
TU232554 lncRNA downstream 250546 14577906 ~ 14578458 (+) True G196378
TU232565 lncRNA downstream 270418 14597778 ~ 14601439 (+) True G196386
TU232571 lncRNA downstream 277943 14605303 ~ 14614460 (+) False G196387
XM_034309281.1 mRNA upstream 3305 14296291 ~ 14323797 (+) False qki2
XM_026914988.2 mRNA upstream 3305 14296291 ~ 14323797 (+) False qki2
XM_026914990.2 mRNA upstream 3305 14296291 ~ 14323797 (+) False qki2
XM_034309282.1 mRNA upstream 3305 14296291 ~ 14323797 (+) False qki2
XM_026914991.2 mRNA upstream 3305 14296291 ~ 14323797 (+) False qki2
XM_026914571.2 mRNA downstream 3059 14330419 ~ 14334549 (+) True timm23a
XM_026914573.2 mRNA downstream 22473 14349833 ~ 14354606 (+) True syt15
XM_026914574.2 mRNA downstream 22473 14349833 ~ 14354606 (+) False syt15
XM_026914486.2 mRNA downstream 42350 14369710 ~ 14391752 (+) True si:ch73-127m5.1
XM_034309568.1 mRNA downstream 67354 14394714 ~ 14445832 (+) True ndst2b
XR_004579176.1 other upstream 768589 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 768673 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 1853363 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 3040834 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 4262476 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2528410 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 3249923 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 3827791 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 4114526 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4478725 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile