RNA id: TU232568



Basic Information


Item Value
RNA id TU232568
length 933
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G196387
representative False

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 14605303 ~ 14614657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AGATTAGTTCCGGGTTTATAGTGCAATTTTCTTAAAACTTAGTAAGCAGCCATGTAATGTTCGATGGCATGTGGGTGAAATGTAAATGGGTGAAACTCCAAAATGTATGCAACATATATTAAATCAACAGCAGAGATAAAAACACATTACGAAAATGGTCTCCGGAAGTAATGCGTACGTGTTTTGATGAACATCTCGAGGTCACGGAGCGTAGAAGGCGTAGGAGTTGTGTATGAAAAGACGATTAATGAACCGTCTAATACTTCTCTTCTAAAAGATTACTGAATTTAACACTGCAACATGAAGCAGCACAAGCTGTCTGCAAAAAAGCGCCTTACCAAACCGCTTCTTTTCGGCACACTGATCGCAGGACTTGCAACAGCTTTCTACAACAGGCACTTGTTCTTTGAAGACGTGGAAGAGCTTCGAGCTCAGGAACGAGCTCGTAATGATGCCAAACGCTTAGAAGTGTTAGAAAGGAGGCAGAAACAAATAGAAGAGCTGGTGGAGAAGAGAAATGCAGGGAACAGTTGAAATCAGACATCTATGCAAGGACATATCTGCTCACCTGTGCTGAAAGCAGAAAAAACAGGGTGGCCACCATCTAACTGTCCAAAAAAATGATGATTGTATTCGGTGCAAAATCGGAGCTACACAAGATACAAGAACGTTACTCCAGTTAATAACACCCCCCTCTAACTAACTACCAAGAAGCTGTATCCCCTCAGTGGATTGAAAATTTAGATGAAAAGATGGACCATCACAAGAGCTATAATCTAACAGTATTTGTACTTCAACCACAGACTTGTGTTGGCTCGTGAATGTCAAACTGCTATTAAAAAATTGCTTGTATAAGATAAGCTCATACgatgctttttttctgtcacagTGACACATTGCCCTCATCATTAGCCCAGTACCTGCCAAGTgaga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU232565 lncRNA upstream 11649 14597778 ~ 14601439 (+) True G196386
TU232554 lncRNA upstream 34630 14577906 ~ 14578458 (+) True G196378
TU232527 lncRNA upstream 87005 14523905 ~ 14526083 (+) True G196360
TU232482 lncRNA upstream 274818 14337963 ~ 14338270 (+) True G196315
TU232479 lncRNA upstream 285728 14327102 ~ 14327360 (+) True G196312
TU233452 lncRNA downstream 652839 15267299 ~ 15268740 (+) True G197174
TU233737 lncRNA downstream 1090672 15705132 ~ 15714087 (+) True G197397
TU233741 lncRNA downstream 1107135 15721595 ~ 15722402 (+) True G197399
TU233783 lncRNA downstream 1239474 15853934 ~ 15856543 (+) True G197434
TU233857 lncRNA downstream 1431843 16046303 ~ 16046505 (+) True G197498
XM_026915271.2 mRNA upstream 3163 14587265 ~ 14609925 (+) True acsf2
XM_026915526.2 mRNA upstream 35417 14571593 ~ 14577671 (+) True tap2t
XM_026915525.2 mRNA upstream 35417 14571593 ~ 14577671 (+) False tap2t
XM_026915812.2 mRNA upstream 42799 14560553 ~ 14570289 (+) True slc16a5a
XM_026915527.2 mRNA upstream 54163 14547948 ~ 14558925 (+) True kctd2
XM_034309495.1 mRNA downstream 97870 14712330 ~ 14736267 (+) True stxbp4
XM_026915935.2 mRNA downstream 123796 14738256 ~ 14744868 (+) True hlfb
XM_034309578.1 mRNA downstream 141168 14755628 ~ 14823551 (+) True ankfn1
XM_026915545.2 mRNA downstream 210775 14825235 ~ 14826880 (+) True nog3
XM_034309224.1 mRNA downstream 278764 14893224 ~ 15213205 (+) False rbfox3a
XR_004579176.1 other upstream 1054575 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 1054659 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 2139349 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 3326820 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 4548462 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 2241310 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 2962823 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 3540691 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 3827426 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 4191625 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile