RNA id: TU233783


Basic Information

Item Value
RNA id TU233783
length 2588
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G197434
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 15853934 ~ 15856543 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcagccacaacattacaaccatctgcctaatattgtgtaggtattgtgtgtgcactctgaccggtctgcagctacgcagccccatacgcaccaagctcttctgtgggatcggaccagaagGGACCACTTTCagtagatactaaccactgcaggTACTACCACCCCACAatacctgccattttggagatgctctgacccggTCATCTAGCCATCATGATTTGACCCggcaaagtcgctcagatcaaCTCTCACAGCAACTTCGAGAGCTGACTGTTCACTTACTGCCTAATATACCTTACCCCTTGACAGAtaccattgtaacaagataatcagtgttattcccATCACCATGGTtctaatgttatggctgatccaCACATCAGTTTAGTAATTTCAGAATTCTGTCGCTTTCATGTATTCAATGCAACTATCATTCCTTTATGGGCAAGTACACAGGGATTAACCATAGCCTGATGGATCAACAGCAAAAGTTGTTAATAAGCATCAAAACACATTAAGTGATATTGGACACCTGATCAGAAACCCAGGTTACACTCGCTTCAAAAGACAAGGTCCAGCTTACAGTCGGTGTGGAGTTTCCCGTGTTCTCGCTGCATCTGTGTAGACTTTCATCAAATACTTTAGTTTCCTCCAAAAACATTCCATTCTGTGGAGGTTTACCATGAACTGCCCATGCGTGAAATCCTGCCATGGATTGATCACTGTGCATTCCCATttttcctgggacaggctcaGTGTCCACTACAtcccagaccaggataaagcagttactgaagataaataaatacatgaattcAGTGGGCGTGGAAAATTGGGATTAAACAAACTATGCTACgagattaaaaatgtaaatATTCATTCACCCATTGTTTGaacaaaagcacacaaagaTCTTTTATCACATATAATAACCTGGGCTTTATTATCAGATTTCTGTATGAATGGTCTCATCTTTTCCCCTCTTGATTttcaatatgatttttttttttcaatagttTAATTCTGTCAGCCACCAGGTTGGACTAGATGGTGGTTCAGTTCAGCCAGTGGATTGAGTATTGGAGATCTGGGCTCTGGACAACACAGGACCACAGAACTGCAGCCTTGCCCAAGAGCCATCCTCTTCATGGAAGAGATGAAGAAGCATATTCCCAAAGGAAGGCACACCTTTTTAACTTGTGGTTTTAGGAAATGAAATAGTCTGGAGTCTGTTGGAGATTGGAGCTGGATGACTCCTCCTGCTCCTGTATCTCACGTGCCGTTTAGCTGAAATAATGACACGGGCACAGTAAGAATGGACAGTCATCGGCATTCGCTCATCAGTGAAGGGTACTGACAAGGACAAAGTCTTCCACCATGCGAAGCACAAAGTCGCTTCACCacaagaacagaaacaaaaatacacacacacacaaaaaaaaaaagatacaaaaataaTTGTCTCTTATACAAAGAAACTATTAAGGGAGGGGGAAGATATATTTCAGAGTATgaaaaaagaactgaaattATACAAAAGCAGCAATAATCGTTACTTAcatcaacaaaaaacaaaagaacaaaacagtgCTTAGTTGAGGTGGAAGCCACAGATGCTTCCGAGTGAAGACTTCATGACCTGTCTATCACTTGTTTTGGGATTATTAATTAAATGGAAGATTCCTACACACCACCCCACCCACCATTCCCAAACCCTCTGAGTGACATACTCCAAAGCCCATTCTAAACAAAACCAACAGGAAACTGAACACAAATAAAGGGGGATATTTAAAAAGACAACAggatacataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagttgcactCATATGATTTGCAAAGACCCATCAGAAATAGAGAATGAAGAACCTGATGCTGTTCACAAGGTTTTAAAagaagaaccaaaaaaaaaaaaaaagaaaaaatacaaccGACACACAACTGTAGCTACCCAAACACCTACAACACGGGAACAAATGATGGTACAGTGTtcatggaaaaagaaaagtgtaaacACAGCACAATAAATAGGTAAAACAGCAGGTTTCCTCACCATGCACAATGCAATGACTCAGTACTCTCGCCCGCAACACGGCTCACGCTCACTCtcagcattatttttttctccccttctgcttttttttcaattttttttttaatttctgtatttCCCAAGTGCAAAACATCACAAATGAACAAATCTGGATTCAAGTAACATATATACAAGATTTTGGTGGGGTGGaggagggattttttttttaatacaaatatgcAGTTACTGTACATTGAATATTTGCCATATTCATAATTTACATATGAATTTTCTCTAacaataatgaatatatattaaaaaggggaaaaaagatgagATTTGCTGTCAAGGCCTGACAGTTGCTGTGGAAACCAGCTGTCTCTTTGCATTCCCAAAAGTGATTGGTGCACAGCACCAAAAGAATGTAGTGGGCAGGGAAAAGATCGCCCAGGCAACGGTTACTACGTCACCTCCATAGCAACTGTGTTTTCCGCTATACTGTTGATGGACTGCTTTTCTTGCTCATGATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233741 lncRNA upstream 131532 15721595 ~ 15722402 (+) True G197399
TU233737 lncRNA upstream 139847 15705132 ~ 15714087 (+) True G197397
TU233452 lncRNA upstream 585194 15267299 ~ 15268740 (+) True G197174
TU232570 lncRNA upstream 1239277 14613088 ~ 14614657 (+) False G196387
TU233857 lncRNA downstream 189760 16046303 ~ 16046505 (+) True G197498
TU233860 lncRNA downstream 193053 16049596 ~ 16049892 (+) True G197501
TU234038 lncRNA downstream 641892 16498435 ~ 16498661 (+) True G197659
TU234039 lncRNA downstream 642171 16498714 ~ 16498945 (+) True G197660
TU234110 lncRNA downstream 901565 16758108 ~ 16763802 (+) True LOC117598690
XM_026914941.2 mRNA upstream 98535 15695763 ~ 15755399 (+) False zeb1b
XM_026914942.2 mRNA upstream 98535 15696775 ~ 15755399 (+) True zeb1b
XM_026914901.2 mRNA upstream 239064 15605292 ~ 15614870 (+) True LOC113527272
XM_026915977.2 mRNA upstream 249438 15554630 ~ 15604496 (+) False svila
XM_026915585.2 mRNA downstream 914694 16771237 ~ 16777328 (+) True ppa1a
XM_026915913.2 mRNA downstream 921746 16778289 ~ 16783706 (+) True sar1aa
XM_026915914.2 mRNA downstream 922449 16778992 ~ 16783706 (+) False sar1aa
XM_026915555.2 mRNA downstream 999146 16855689 ~ 16863437 (+) False anapc16
XM_026915554.2 mRNA downstream 999169 16855712 ~ 16863437 (+) False anapc16
XR_004579176.1 other upstream 2295421 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 2295505 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 3380195 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 4567666 11286197 ~ 11286268 (+) True trnaq-cug_16
trnal-aag_8 other upstream 5789308 10064545 ~ 10064626 (+) True trnal-aag_8
TU234137 other downstream 999227 16855770 ~ 16863495 (+) False anapc16
trnai-uau_6 other downstream 1720740 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 2298608 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 2585343 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 2949542 18806085 ~ 18812262 (+) True si:ch211-221j21.3

Expression Profile