Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU233860 |
| length | 297 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 1 |
| gene id | G197501 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 16049596 ~ 16049892 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU233857 | lncRNA | upstream | 3091 | 16046303 ~ 16046505 (+) | True | G197498 |
| TU233783 | lncRNA | upstream | 193053 | 15853934 ~ 15856543 (+) | True | G197434 |
| TU233741 | lncRNA | upstream | 327194 | 15721595 ~ 15722402 (+) | True | G197399 |
| TU233737 | lncRNA | upstream | 335509 | 15705132 ~ 15714087 (+) | True | G197397 |
| TU233452 | lncRNA | upstream | 780856 | 15267299 ~ 15268740 (+) | True | G197174 |
| TU234038 | lncRNA | downstream | 448543 | 16498435 ~ 16498661 (+) | True | G197659 |
| TU234039 | lncRNA | downstream | 448822 | 16498714 ~ 16498945 (+) | True | G197660 |
| TU234110 | lncRNA | downstream | 708216 | 16758108 ~ 16763802 (+) | True | LOC117598690 |
| XR_004579312.1 | lncRNA | downstream | 708253 | 16758145 ~ 16763545 (+) | False | LOC117598690 |
| TU234113 | lncRNA | downstream | 714116 | 16764008 ~ 16764327 (+) | True | G197726 |
| XM_026914941.2 | mRNA | upstream | 294197 | 15695763 ~ 15755399 (+) | False | zeb1b |
| XM_026914942.2 | mRNA | upstream | 294197 | 15696775 ~ 15755399 (+) | True | zeb1b |
| XM_026914901.2 | mRNA | upstream | 434726 | 15605292 ~ 15614870 (+) | True | LOC113527272 |
| XM_034309190.1 | mRNA | upstream | 445100 | 15554631 ~ 15604496 (+) | False | svila |
| XM_026915585.2 | mRNA | downstream | 721345 | 16771237 ~ 16777328 (+) | True | ppa1a |
| XM_026915913.2 | mRNA | downstream | 728397 | 16778289 ~ 16783706 (+) | True | sar1aa |
| XM_026915914.2 | mRNA | downstream | 729100 | 16778992 ~ 16783706 (+) | False | sar1aa |
| XM_026915555.2 | mRNA | downstream | 805797 | 16855689 ~ 16863437 (+) | False | anapc16 |
| XM_026915554.2 | mRNA | downstream | 805820 | 16855712 ~ 16863437 (+) | False | anapc16 |
| XR_004579176.1 | other | upstream | 2491083 | 13483301 ~ 13558513 (+) | False | tcf7l2 |
| XR_004579175.1 | other | upstream | 2491167 | 13483301 ~ 13558429 (+) | False | tcf7l2 |
| TU231182 | other | upstream | 3575857 | 12472683 ~ 12473739 (+) | False | LOC113527673 |
| trnaq-cug_16 | other | upstream | 4763328 | 11286197 ~ 11286268 (+) | True | trnaq-cug_16 |
| trnal-aag_8 | other | upstream | 5984970 | 10064545 ~ 10064626 (+) | True | trnal-aag_8 |
| TU234137 | other | downstream | 805878 | 16855770 ~ 16863495 (+) | False | anapc16 |
| trnai-uau_6 | other | downstream | 1527391 | 17577283 ~ 17577376 (+) | True | trnai-uau_6 |
| TU234778 | other | downstream | 2105259 | 18155151 ~ 18158629 (+) | False | pde6gb |
| TU235296 | other | downstream | 2391994 | 18441886 ~ 18510159 (+) | True | G198737 |
| XR_004579138.1 | other | downstream | 2756193 | 18806085 ~ 18812262 (+) | True | si:ch211-221j21.3 |
