Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579312.1 |
| length | 321 |
| lncRNA type | inter_gene |
| GC content | 0.52 |
| exon number | 3 |
| gene id | LOC117598690 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 16758108 ~ 16763802 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU234039 | lncRNA | upstream | 259200 | 16498714 ~ 16498945 (+) | True | G197660 |
| TU234038 | lncRNA | upstream | 259484 | 16498435 ~ 16498661 (+) | True | G197659 |
| TU233860 | lncRNA | upstream | 708253 | 16049596 ~ 16049892 (+) | True | G197501 |
| TU233857 | lncRNA | upstream | 711640 | 16046303 ~ 16046505 (+) | True | G197498 |
| TU233783 | lncRNA | upstream | 901602 | 15853934 ~ 15856543 (+) | True | G197434 |
| TU234113 | lncRNA | downstream | 463 | 16764008 ~ 16764327 (+) | True | G197726 |
| TU234207 | lncRNA | downstream | 143285 | 16906830 ~ 16907142 (+) | True | G197816 |
| TU234194 | lncRNA | downstream | 180401 | 16943946 ~ 16954011 (+) | True | G197803 |
| XR_004579295.1 | lncRNA | downstream | 267205 | 17030750 ~ 17043247 (+) | True | LOC117598668 |
| TU234450 | lncRNA | downstream | 564229 | 17327774 ~ 17327950 (+) | True | G198007 |
| XM_026914941.2 | mRNA | upstream | 1002746 | 15695763 ~ 15755399 (+) | False | zeb1b |
| XM_026914942.2 | mRNA | upstream | 1002746 | 15696775 ~ 15755399 (+) | True | zeb1b |
| XM_026914901.2 | mRNA | upstream | 1143275 | 15605292 ~ 15614870 (+) | True | LOC113527272 |
| XM_034309190.1 | mRNA | upstream | 1153649 | 15554631 ~ 15604496 (+) | False | svila |
| XM_026915585.2 | mRNA | downstream | 7692 | 16771237 ~ 16777328 (+) | True | ppa1a |
| XM_026915913.2 | mRNA | downstream | 14744 | 16778289 ~ 16783706 (+) | True | sar1aa |
| XM_026915914.2 | mRNA | downstream | 15447 | 16778992 ~ 16783706 (+) | False | sar1aa |
| XM_026915555.2 | mRNA | downstream | 92144 | 16855689 ~ 16863437 (+) | False | anapc16 |
| XM_026915554.2 | mRNA | downstream | 92167 | 16855712 ~ 16863437 (+) | False | anapc16 |
| XR_004579176.1 | other | upstream | 3199632 | 13483301 ~ 13558513 (+) | False | tcf7l2 |
| XR_004579175.1 | other | upstream | 3199716 | 13483301 ~ 13558429 (+) | False | tcf7l2 |
| TU231182 | other | upstream | 4284406 | 12472683 ~ 12473739 (+) | False | LOC113527673 |
| trnaq-cug_16 | other | upstream | 5471877 | 11286197 ~ 11286268 (+) | True | trnaq-cug_16 |
| trnal-aag_8 | other | upstream | 6693519 | 10064545 ~ 10064626 (+) | True | trnal-aag_8 |
| TU234137 | other | downstream | 92225 | 16855770 ~ 16863495 (+) | False | anapc16 |
| trnai-uau_6 | other | downstream | 813738 | 17577283 ~ 17577376 (+) | True | trnai-uau_6 |
| TU234778 | other | downstream | 1391606 | 18155151 ~ 18158629 (+) | False | pde6gb |
| TU235296 | other | downstream | 1678341 | 18441886 ~ 18510159 (+) | True | G198737 |
| XR_004579138.1 | other | downstream | 2042540 | 18806085 ~ 18812262 (+) | True | si:ch211-221j21.3 |
