RNA id: TU234553


Basic Information

Item Value
RNA id TU234553
length 1772
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G198075
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17538549 ~ 17540320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTGCTTTCAGTATATCCCTAACCACAGAATAGACAGGAGCCAGTGATAGAGAGAGGCTAGCTTTTGTGCTTGCTATGTGTAcggtgaaggaggaggagagtgaCAGCTCTCCGACTGCTGAGTGTGTGGGTGAGGTGTTTGCTAATCAATTTGGTTAACACCTCTCGGTCCGCACAGTCATCTTCTTCGATTGAGATATGGGCAGGTGGTGGCTTTATCCTTGTGTAGCTCAACATCTGATGTTTGTTTCTTGAAGTTAAGGATCTGATCTTCATAATGGGGCTGCAACGCTGACTGGAATTTCGTTTCAATTATAACATTATCCACTAGGACTACACCTTGCTGCATGTTTTTTCTCATATTTCCACAACATCCCGTCAGTCgctataaatatttgttttcctttatggactctctctgttcttccttTCTTCATATCTCAAGTGCTTTCAAATCCAAACTGATCTGACTTGATCTAACGGGCTGGAGAAACTTCTCCATGGGAACAAAGTGTTTCTGTTTGTAAAGCCAGACCAGGGCTTTTGAGGAAAAGCCGACAAAGGTCTGGAGAAGTGTCAAGACCCGAAAAGGCTTGCCAGATGCCCCTCATAGGCGGCCATGCCATCTGGTGCCGGCTGTTCCCACAGTTGTCCTTTTTAAATATCACCAAACACAAGACATTCTGTCTCTTTGGGTCAGTTTCATTAGTTTTCACAGAGATGGGGTTATAATGCAAACACTGGCTTATGTAGCTCCTTTGGGTTGTTATGATTACAGTGTGCTATCCAGATTGGGGCTCTTTGTATTTTTCTCCTGTCACTTACATAAATATGAATCACAGTTGTCTGAGGTACCTGTTATCATTGAAACTTATCAAAAATGTAGAGATGCTGCATTTTAGTAGTCATTTTCTCTGTAGACATGATCATATTTCTATAGTTTAGCTTACAATTCATGAGgcttttaaaggttttaaaacaAAGGCACAGAAAGATCAGATGAGGGGTAACAGAGCTGGGCTGTGGACCAGTATGTCCCAGAGAAACCAATGTCAGTTGAGAAACTCAGCAGAGAGACTTCGCACGCAGCGTGCTGAGCGGAATTTGAGCTCGTGGTAGCACTGCACAAAGCTGTGGTAGATAAAGGTAATTGGGAGAGCCAGGAGCACAATGCCACTcacgacacacacaccacccagcACGCGGCCCGGCATTGTGATGGGATACATGTCTCCATAGCCTACGGTGGTCATGGAGATAATAACCCACCAGCAGGCTGCCGGGATGCTGGCGTAGTCCTCATTGCTGCTTTCCAGGTCCAGCCCGTGCTCCAGAAGCTGAGCCAGAGCGCTGAAGATGGCCATGGCAACACACACGAACACCAGCAGCATGACCATCTCGCGGTAGCAGCGGCGCAGTGTCAGCCCCAGCGTCTGCAGACCAAGGAAGTGGCGTGCCAGCTTAATTAGCCAGAAGATGCGCATCATCCTCAGCACACGCAGTGTGACACCTGCTCTTTGAAGCTGCGGGTTTTCCCCAGTCAGGGCTGTCATGGCCACTGATACATAGTAAGGTGTTATAGCCAGGAGGTCGATGATGTTCAGAGGCCGCCGTACAAACTCACATTTGTCCCGTGAGACAATGAAACGCACTATGCACTCGGCAGTGAACCAGCCAATGCAAACCGCTTCAATGATCctggcagagagagaggacagagagaaagtgaacaGACAGCAGCGGTTGCAATTCATGCTAATAACACTACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234511 lncRNA upstream 87899 17450357 ~ 17450650 (+) True G198050
TU234513 lncRNA upstream 98187 17440148 ~ 17440362 (+) True G198052
TU234512 lncRNA upstream 101597 17431173 ~ 17436952 (+) True G198051
TU234503 lncRNA upstream 122680 17411454 ~ 17415869 (+) False G198044
TU234504 lncRNA upstream 122680 17411454 ~ 17415869 (+) True G198044
TU234556 lncRNA downstream 1536 17541856 ~ 17542072 (+) True G198078
TU234561 lncRNA downstream 24279 17564599 ~ 17565031 (+) True G198083
TU234562 lncRNA downstream 28058 17568378 ~ 17569162 (+) True G198084
TU234560 lncRNA downstream 30344 17570664 ~ 17572005 (+) False mta3
TU234559 lncRNA downstream 31985 17572305 ~ 17574233 (+) True G198081
XM_026915218.2 mRNA upstream 50823 17480223 ~ 17487726 (+) True pigf
XM_026915604.2 mRNA upstream 64724 17468136 ~ 17473825 (+) True gch2
XM_026914880.2 mRNA upstream 211579 17316264 ~ 17326970 (+) True fshr
XM_026915957.2 mRNA upstream 263988 17125185 ~ 17274561 (+) False nrxn1a
XM_026915018.2 mRNA downstream 5473 17545793 ~ 17572065 (+) True mta3
XM_026915019.2 mRNA downstream 5473 17545793 ~ 17572065 (+) False mta3
XM_026915020.2 mRNA downstream 5473 17545793 ~ 17570916 (+) False mta3
XM_026914980.2 mRNA downstream 102700 17643020 ~ 17669237 (+) True ppm1bb
XM_026914979.2 mRNA downstream 102700 17643020 ~ 17665378 (+) False ppm1bb
TU234137 other upstream 675054 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 3980036 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 3980120 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 5064810 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 6252281 11286197 ~ 11286268 (+) True trnaq-cug_16
trnai-uau_6 other downstream 36963 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 614831 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 901566 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 1265765 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 1265803 18806123 ~ 18811512 (+) False si:ch211-221j21.3

Expression Profile