RNA id: XM_026915018.2


Basic Information

Item Value
RNA id XM_026915018.2
length 3550
RNA type mRNA
GC content 0.48
exon number 19
gene id mta3
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 17545793 ~ 17572065 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgttcggtgagagagtgtgtgtgtgtgtgtgtgtgtttcggtgagagagtgtgtgtgtgtgccgagAGAGGGGCTCTCCACtaacaaaaaagaaacccaAACCAGGGAGAGAAATTTCAAGCTCATTTCGCTGTTTATCCCCTTTCTACAACAGTCTGCAACGTTTTAATAACttataattattacatatttttatttacttatttattatcttttttagtttatggtttgtttttttaccaCTCCGGGAGGGCAGAAATGGCGGCCAACATGTACCGGGTCGGAGATTATGTCTTTTTTGAGAATTCTTCAAGCAACCCTTATCTGATCCGGAGAATAGAGGAGCTGAACAAGACGGCGAGCGGCAATGTGGAGGCAAAGGTGGTGTGTTTCTACAGGAGAAGGGACATCTCACAGAGCCTCATCCAGCTGGCAGACAAGCATGCGAaagacttggaggaagagaaggagacgCCTACAGAGCCAGAGCTTAGTGAGAAGCAGAAACACCAGCTCCGACACAGAGAGCTTTTTCTGTCTCGCCAGTATGAATCGCTCCCTGCCACACACATCAGGGGGAAGTGCAGTGTGGCCCTCCTGAATGAGACTGAATCAGTACTTTCCTATCTGGACAAAGAGgatgcATTTTTTTACTCCCTGGTGTATGACCCAACACAGAAGACCCTGCTGGCAGACAAAGGGGAGATCCGTGTGGGTCCCCGCTTTCAAGCTGACGTCCCTGATATGCTCCAGGAAGGGGAAGCAGATGACAGGGACCAGTCCAAGCTGGAGGTGAAAATGTGGGACCCAGAATGTCCACTGACCAATAAGCAGATAGACCAGTTCCTAGTGGTGGCTCGGGCGGTGGGTACCTTTGCTCGAGCTCTGGACTGCAGCAGCTCCGTCAGGCAGCCCAGTTTACACATGAGTGCTGCAGCGGCATCACGAGACATAACGCTGTTCCATGCCATGGACACTCTGCACAGACATGGCTATGACCTTTCAAGTGCACTGAGTGTTCTGGTGCCACAGGGAGGCCCTGTGCTCTGCAGGGACGAGATGGAGGAGTGGAGCTCTTCAGAGGCCAACCTGTTTGAGGAAGCATTGGAGAAATACGGCAAGGATTTCAACGACATCCGGCAAGACTTTCTCCCATGGAAGTCCCTGACAAGCATTATTGAGTATTACTACATGTGGAAAACTACAGACAGATATGTGCAGCAGAAGCGACTGAAGGCAGCTGAAGCAGAGAGCAAATTAAAGCAAGTCTACATCCCCACGTATAATAAACCAAATCCTAATCAGATCTCTGTCAGCAATGGCAAGATGACCACCATGAATGGCGCAGCAGGGCCGGGCGGGTACCATGCAGCCAGCGGGGGTCGTGCATGTGAAAGCTGTTTTGCCATGCAGTCCCCTCAGTGGTACTCGTGGGGTCCTCCGAACATGCAGTGTCGCCTCTGTGTCTCCTGCTGGATGTACTGGAAAAAGTATGGTGGCCTGAAGATGCCAAGCCGAGCTGAGGGAACAGAGGAGAAAACGCCTCCAAGCCCTGCTTCAAATGAGATGCGTTCACGTGGCCACAGCCTGCGTCAGACCTCCCACATGGTTCCCATGAGGAACAGCGGAAGTCCCAAATCCTCCATGAAGACTAAGCAGGCCTTTCTGCTACAGGCCACGCGCCTCACCAAGCTGGCGCGTCACATGTGCCGTGACCTCATCAGGCTGCGCCGGGCTGCGCGCCGCCCCTTTGTGCCCATTAACTGTGGCGCCATAAAGGCGGAGTACATGATTCGAGTGGCAGAAGGCATGACAGGGCGATCCACCAAGCCCAAACCTTCCCAGAGGAGCACGCTAACCAGCGTCCTGCAGTATCTCGAGTCACGTCCAGCGCCCCATGTCCAGCGCTCTCATCGTACACCTGGCCTGCAGGTCCAACCACCACGCCGGCTTCTTTCCTCCCTGCCAAGCCATGGTCCACTCGGCATGCTGGGAAAACGCTCTTACCACCATAGCAGCAGGATGGACTCTGAGAGAAGAGCAAACGCACCAGGACAAGaaaatcaGGGTCACATTGTGGGTCCCATTCTGCAGCACAATGGACGGAGCAGTGGCAGCCCCAGCTTACGAGCCAGCAACATGATAATGCGCAAGAGACGGCCCAACTGGATCGATGCACCAGATGACAGCTTTTTCCTTGTTTCCCGAGAAACCAGGAAAGCCCGGAGGCTGCTCACTCGTTCCCAGTTAAGAAGAGCCTGTAGGCAGCCATGTGAGCAGATTAATTTGCGCAGGGTCCCCCAGGGGCCAGTGCAGGGACCCATCCTCGCACCCCCTCACCCTAGTCTACGGATGCGAGGTCCCATTGTGATCCACGACTGACCCTCGCCTGTGCCGTTTCACCTTCCCGCCTCTTCTCTTTGATTCTTGCCCCTAATCATACAACACAGTGGCCACACCACATCTCCGTTCTCTCTGGAAATACAGAAACAGTGCATTCATTGAAGCATAGTTAACTAACACCATGTACTATGCCATATAAACAAGCACTTAAAGTAACTCTAGGGCTCCATAAGTCTCAGTTAAGCTTCTCTAAACTCTGAACTGATCGTCTTTGTTAATCTAATACTTTGTGGATGTAAGGATTGAGTCATCATGGTCCTATAAGTCAGTGGTCAGATGAAACGACATTATAATGTACAAAGCCTTTCTTTCTCATGCTGAAGACTCTTGACAGACCCTTCTGTAAAGTTTTTGTGTGctattttgtttgtaattttatttagcaCTGCATTGCAGTCCTTTGATTCTCTTACCTTCTGTGAGTATTATGACTACAGGTTCGTGAGCTGTTTTAAACTATGTTTGAACAGAAGCGAAGGTTTGACGTGTTGGACATTACTGGAAGGCAGAATTTTGTAAATAGCATGGGACCTCTGGATACAAGGTGTAGCTTTTTCCTCCAGTCTTATCCGTTGGGGAAGCCACCAGTTTGATGATCTTGTTTTCTATTTCAGACAGTGTAATGTGTTTCTGATTGCACTTATCAGTGGAGGTTCATGTTACTCTTGATGACTACTATACAGATTCAGGGGCACTGATTGGCAAGGATGATCTGACGTTCTACTAAAATTATGAGGCACACTGAGTATATGACATTATCCACATGCCAGAAAAATGATGGTTCTTTTGATCTAAGTACATAAGATGTTGAGTGCCCTTTCAGaactaataaaagaaacaagGTGTTGAGAACTTTAAAAACGAACTTGAATTTAGCAGTTTGTCCACAGATggttatttggttatttttcCTCCATATGTCCATACAAAGTTTCATATGtgacaaaaataaactaaataatgcAGAATGGGAGATACCATGATACAGATTCAGGCTGTTTATACTGCATGTGACAGTCATAATGATGAGcaacttccttttttttaatgcttcatatattgtgttgtgtttactTGTATGTCATGTGTTAAGTGAAacatgcagaataaaaaaaagattgta

Function

GO: NA

KEGG:

id description
K11660 MTA; metastasis-associated protein MTA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234556 lncRNA upstream 3721 17541856 ~ 17542072 (+) True G198078
TU234553 lncRNA upstream 5473 17538549 ~ 17540320 (+) True G198075
TU234511 lncRNA upstream 95143 17450357 ~ 17450650 (+) True G198050
TU234513 lncRNA upstream 105431 17440148 ~ 17440362 (+) True G198052
TU234512 lncRNA upstream 108841 17431173 ~ 17436952 (+) True G198051
TU234559 lncRNA downstream 240 17572305 ~ 17574233 (+) True G198081
TU234570 lncRNA downstream 3875 17575940 ~ 17576586 (+) True G198091
TU234567 lncRNA downstream 98115 17670180 ~ 17670945 (+) True G198088
TU234642 lncRNA downstream 291474 17863539 ~ 17912523 (+) True G198158
TU234657 lncRNA downstream 343361 17915426 ~ 17918595 (+) True G198170
XM_026915218.2 mRNA upstream 58067 17480223 ~ 17487726 (+) True pigf
XM_026915604.2 mRNA upstream 71968 17468136 ~ 17473825 (+) True gch2
XM_026914880.2 mRNA upstream 218823 17316264 ~ 17326970 (+) True fshr
XM_026915956.2 mRNA upstream 271232 17125185 ~ 17274561 (+) False nrxn1a
XM_026914980.2 mRNA downstream 70955 17643020 ~ 17669237 (+) True ppm1bb
XM_026914979.2 mRNA downstream 70955 17643020 ~ 17665378 (+) False ppm1bb
XM_026915577.2 mRNA downstream 136851 17708916 ~ 17711812 (+) True six3b
XM_026915176.2 mRNA downstream 160695 17732760 ~ 17792629 (+) True prkcea
XM_026914794.2 mRNA downstream 223963 17796028 ~ 17822290 (+) True epas1a
TU234137 other upstream 682298 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 3987280 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 3987364 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 5072054 12472683 ~ 12473739 (+) False LOC113527673
trnaq-cug_16 other upstream 6259525 11286197 ~ 11286268 (+) True trnaq-cug_16
trnai-uau_6 other downstream 5218 17577283 ~ 17577376 (+) True trnai-uau_6
TU234778 other downstream 583086 18155151 ~ 18158629 (+) False pde6gb
TU235296 other downstream 869821 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 1234020 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 1234058 18806123 ~ 18811512 (+) False si:ch211-221j21.3

Expression Profile