RNA id: TU234778


Basic Information

Item Value
RNA id TU234778
length 637
RNA type TUCP
GC content 0.50
exon number 4
gene id pde6gb
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18155145 ~ 18160086 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGCGTAGACACCCACTCCTCCAGCAGTGACGGAGACACATACAACGAGCGGTGCTGCGCACATCCAGCCTGGCAGTGTAATATCAGACTGAAGCTCTACATCAGGGAGAGAGAATACAGAGGGGGTTGAACACAAAACAACCACGAACCATCAGTGGTTTCATCAAAACAACCAACAGCTATGAATCTCGAGCCCCCTAAATCCGAATTTAAGTCGGCCACTCGGGTGACCGGAGGCCCAGCCACGCCACGCAAAGGCCCACCCAAATTTAAACAGAGGCAGACTCGCCAGTTTAAGAGCAAACCACCAAAGAAGGGCATCCAGGGATTTGGAGACGATATTCCTGGTATGGAAGGTTTAGGCACTGACATCACAGTCATCTGCCCTTGGGAGGCCTTCAGCCACTTGGAGCTGCACGAGCTGGCTCAATACGGCATCATCTGAGTCCACCATCTTCCCACCATCCTCTTCACTTTCCCCTTCCATTCTGCCTCCACCCTGGCCATGGGCTCCTGTGGGTCcatttgcacacacaccttATCATAGAACATtgcaaaaaatggaaaaatcagagcaaaaaacaaacaaacaaacaaacaaacaaacaaaaaacttacCTAACTGTCCAGCtcatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234779 lncRNA upstream 16108 18138151 ~ 18139043 (+) True G198279
TU234706 lncRNA upstream 169683 17985163 ~ 17985468 (+) True G198213
TU234664 lncRNA upstream 217380 17937532 ~ 17937771 (+) True G198177
TU234661 lncRNA upstream 220781 17934030 ~ 17934370 (+) True G198174
TU234657 lncRNA upstream 236556 17915426 ~ 17918595 (+) True G198170
TU234782 lncRNA downstream 3045 18161674 ~ 18177516 (+) True G198282
XR_004579322.1 lncRNA downstream 4089 18162718 ~ 18167376 (+) True LOC117598699
TU234820 lncRNA downstream 190335 18348964 ~ 18349413 (+) True G198311
TU235279 lncRNA downstream 259454 18418083 ~ 18419984 (+) True G198722
TU235326 lncRNA downstream 367039 18525668 ~ 18531296 (+) True G198767
XM_026914778.2 mRNA upstream 2061 18150491 ~ 18153090 (+) True oxld1
XM_034309643.1 mRNA upstream 18793 18127999 ~ 18136358 (+) False gprc5c
XM_026915815.2 mRNA upstream 18793 18128002 ~ 18136358 (+) True gprc5c
XM_026915470.2 mRNA upstream 28848 18123157 ~ 18126303 (+) True itln3
XM_026915649.2 mRNA upstream 35100 18109639 ~ 18120051 (+) True gpr142
XM_034309644.1 mRNA downstream 9185 18167814 ~ 18179057 (+) True nploc4
XM_034309271.1 mRNA downstream 26709 18185338 ~ 18226812 (+) True rnf213b
XM_034309272.1 mRNA downstream 26709 18185338 ~ 18220933 (+) False rnf213b
XM_026914591.2 mRNA downstream 26709 18185338 ~ 18218637 (+) False rnf213b
XM_026914768.2 mRNA downstream 68753 18227382 ~ 18252802 (+) False cep131
trnai-uau_6 other upstream 577775 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 1291656 16855770 ~ 16863495 (+) False anapc16
XR_004579176.1 other upstream 4596638 13483301 ~ 13558513 (+) False tcf7l2
XR_004579175.1 other upstream 4596722 13483301 ~ 13558429 (+) False tcf7l2
TU231182 other upstream 5681412 12472683 ~ 12473739 (+) False LOC113527673
TU235296 other downstream 283257 18441886 ~ 18510159 (+) True G198737
XR_004579138.1 other downstream 647456 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other downstream 647494 18806123 ~ 18811512 (+) False si:ch211-221j21.3
XR_004579324.1 other downstream 1368013 19526642 ~ 19566684 (+) False LOC113527713
TU237322 other downstream 3844195 22002824 ~ 22003274 (+) True G200571

Expression Profile