RNA id: XM_034309112.1


Basic Information

Item Value
RNA id XM_034309112.1
length 1549
RNA type mRNA
GC content 0.39
exon number 4
gene id si:ch211-221j21.3
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 18806077 ~ 18812262 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGTGGGAACAACAGCCGAAAATTGAACACAAGGAAGAAGTTCAGAATGGTGTACCGCGTCGATGCGGCGTATTGACTGCTCTCGGTGCTTTGGAGCTACAACAACGGTGCATTTCCGGTTGTTCTGAGAGCTCCAGGGGGTGTAATTTGGGAGAAAATTGATTCTGCGATTTGGGCTGCAGTGCATGCTTGTTAGTGTTTCTGAAAGGCAGTGTGGAGTGTGATTAGTTCTCACTGGTTGGCTTGGCTTGGCTTGGCTTGGATTGGATTGGACTGTTCAGTTCAGCCTCCAGCCCTGGTGTCTAATACATAAAGGAAGTCTGAccttgttgaagagagagagagagagagtgtgagaaaccCTTCATCATGTCCATGGATTGTGTAAGTCCACTAGTacacagtaagagacagagggaggaagAGCACAGCCAGTGGGACTGCCAGTCGAAAAGAGCATGCACTGGATTGGGAAGATGCATCGAGGTCAGATGTGATGTTGTGATGGACAGCACAATGGACTCATGGGACACGCCACAAGCTGGCCATCAAAACAGCGCCGGTGCAGATCACCACGTCACCACAATGGTTCATGGCACAGCTCAGCAATCTTGTCCCAGGTGCATGGCAGGAGAACCGggCCATATAAATCATATCATGCAGAGGTATTGATCACAAGGTCAGACAGGTCCTGGAGAGGATGAATAAGGAAGCAGACTGCATGGATCGCTGGGAGTGGAGGAACAGCCTGCACTTTGGCCAGTTCATATCACAACACATTTTGTGCCTTATTTATAACCACAAGTACTCAAGTTCTCAGTTCTAATGTAgcctgtgggtttttttcttttctgctttttttttttttttaaatatcagcactTAAATGACTGCTGATCTAATAGAAGGGCTGGCCACAGGTAATTACTAGTAATTTCAGGTTATCACATTCAATATGAATGCTAGTTTAGATACTACTACAGTGTAGTTTGCAGGGCATTCACTGATGATTTGTAGAAAGCTGTATTTCTAttcatttgtgtatttagtGTAGACTGAATGCGTTCCAGATTATTACTATGTCTTGCTTTTTCAAAAGTATTGTACAACACAATGCAATGAAATTTTTAGATGATTTTGTAGAATCAAATGTTTCAAAgggaatgttttatttataaaggtaATAGTCATTTAAATTGTCTTGGTTTTAAAACTTCCATTATATTGGTTGTACAATGTATAAGATTGTACTGTTTGTATCTAGAGATTTTTCCTTGTAAAATCAGGCAAGCAGTTAAAATTGCACTGAAATCcattatgtaattataaaggctgtttttctttctttcatttttttaaaaaaaatatttttaacatttaacatttcccTGTTTCAAATGCTGTTGCCTGAATAATTACTTGTGAACATGAGGGGGAAAATCacggatttctttctttctttttcttttattattattattattattttttgtaccaACTTAGTAATTATGTAACACTTTACATAAAGTCTAATTTGATTCACAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235464 lncRNA upstream 37400 18768393 ~ 18768690 (+) True G198886
TU235453 lncRNA upstream 102391 18703475 ~ 18703699 (+) True G198876
TU235395 lncRNA upstream 107587 18680173 ~ 18698503 (+) True G198818
TU235326 lncRNA upstream 274794 18525668 ~ 18531296 (+) True G198767
TU235279 lncRNA upstream 386106 18418083 ~ 18419984 (+) True G198722
TU235481 lncRNA downstream 11371 18823633 ~ 18824561 (+) True G198901
XR_003402870.2 lncRNA downstream 497221 19309483 ~ 19314815 (+) True LOC113527366
TU235663 lncRNA downstream 614118 19426380 ~ 19426595 (+) True G199051
TU235786 lncRNA downstream 980372 19792634 ~ 19856480 (+) True G199161
TU235814 lncRNA downstream 1064479 19876741 ~ 19885988 (+) True G199187
XM_026915613.2 mRNA upstream 103333 18614191 ~ 18702757 (+) True LOC113527622
XM_026915614.2 mRNA upstream 103333 18614191 ~ 18702757 (+) False LOC113527622
XM_026915376.2 mRNA upstream 298232 18498245 ~ 18507858 (+) True bnip3
XM_026915375.2 mRNA upstream 376402 18421553 ~ 18429688 (+) True LOC113527495
XM_034309218.1 mRNA upstream 457733 18335498 ~ 18348357 (+) False aatkb
XM_026915562.2 mRNA downstream 15374 18827636 ~ 18920766 (+) True ebf3a
XM_034309466.1 mRNA downstream 15375 18827637 ~ 18920766 (+) False ebf3a
XM_026915574.2 mRNA downstream 15377 18827639 ~ 18920766 (+) False ebf3a
XM_026915575.2 mRNA downstream 15377 18827639 ~ 18920766 (+) False ebf3a
XM_026915570.2 mRNA downstream 16159 18828421 ~ 18920766 (+) False ebf3a
TU235296 other upstream 295931 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 647461 18155151 ~ 18158629 (+) False pde6gb
trnai-uau_6 other upstream 1228714 17577283 ~ 17577376 (+) True trnai-uau_6
TU234137 other upstream 1942595 16855770 ~ 16863495 (+) False anapc16
XR_004579175.1 other upstream 5247661 13483301 ~ 13558429 (+) False tcf7l2
XR_004579324.1 other downstream 714380 19526642 ~ 19566684 (+) False LOC113527713
TU237322 other downstream 3190562 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 3196249 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 3985919 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 4393404 23205666 ~ 23206379 (+) True G201154

Expression Profile