Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU235481 |
| length | 929 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 1 |
| gene id | G198901 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 18823633 ~ 18824561 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005198 | structural molecule activity | molecular_function |
| GO:0005201 | extracellular matrix structural constituent | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU235464 | lncRNA | upstream | 54943 | 18768393 ~ 18768690 (+) | True | G198886 |
| TU235453 | lncRNA | upstream | 119934 | 18703475 ~ 18703699 (+) | True | G198876 |
| TU235395 | lncRNA | upstream | 125130 | 18680173 ~ 18698503 (+) | True | G198818 |
| TU235326 | lncRNA | upstream | 292337 | 18525668 ~ 18531296 (+) | True | G198767 |
| TU235279 | lncRNA | upstream | 403649 | 18418083 ~ 18419984 (+) | True | G198722 |
| XR_003402870.2 | lncRNA | downstream | 484922 | 19309483 ~ 19314815 (+) | True | LOC113527366 |
| TU235663 | lncRNA | downstream | 601819 | 19426380 ~ 19426595 (+) | True | G199051 |
| TU235786 | lncRNA | downstream | 968073 | 19792634 ~ 19856480 (+) | True | G199161 |
| TU235814 | lncRNA | downstream | 1052180 | 19876741 ~ 19885988 (+) | True | G199187 |
| TU235845 | lncRNA | downstream | 1119683 | 19944244 ~ 19944466 (+) | True | G199216 |
| XM_034309113.1 | mRNA | upstream | 11371 | 18806077 ~ 18812262 (+) | False | si:ch211-221j21.3 |
| XM_034309112.1 | mRNA | upstream | 11371 | 18806090 ~ 18812262 (+) | False | si:ch211-221j21.3 |
| XM_026915613.2 | mRNA | upstream | 120876 | 18614191 ~ 18702757 (+) | True | LOC113527622 |
| XM_026915614.2 | mRNA | upstream | 120876 | 18614191 ~ 18702757 (+) | False | LOC113527622 |
| XM_026915376.2 | mRNA | upstream | 315775 | 18498245 ~ 18507858 (+) | True | bnip3 |
| XM_026915562.2 | mRNA | downstream | 3075 | 18827636 ~ 18920766 (+) | True | ebf3a |
| XM_034309466.1 | mRNA | downstream | 3076 | 18827637 ~ 18920766 (+) | False | ebf3a |
| XM_026915574.2 | mRNA | downstream | 3078 | 18827639 ~ 18920766 (+) | False | ebf3a |
| XM_026915575.2 | mRNA | downstream | 3078 | 18827639 ~ 18920766 (+) | False | ebf3a |
| XM_026915570.2 | mRNA | downstream | 3860 | 18828421 ~ 18920766 (+) | False | ebf3a |
| XR_004579138.1 | other | upstream | 11371 | 18806085 ~ 18812262 (+) | True | si:ch211-221j21.3 |
| TU235479 | other | upstream | 12121 | 18806123 ~ 18811512 (+) | False | si:ch211-221j21.3 |
| TU235296 | other | upstream | 313474 | 18441886 ~ 18510159 (+) | True | G198737 |
| TU234778 | other | upstream | 665004 | 18155151 ~ 18158629 (+) | False | pde6gb |
| trnai-uau_6 | other | upstream | 1246257 | 17577283 ~ 17577376 (+) | True | trnai-uau_6 |
| XR_004579324.1 | other | downstream | 702081 | 19526642 ~ 19566684 (+) | False | LOC113527713 |
| TU237322 | other | downstream | 3178263 | 22002824 ~ 22003274 (+) | True | G200571 |
| XR_003402874.2 | other | downstream | 3183950 | 22008511 ~ 22012304 (+) | False | srsf2a |
| TU237829 | other | downstream | 3973620 | 22798181 ~ 22871284 (+) | True | mrpl27 |
| TU237980 | other | downstream | 4381105 | 23205666 ~ 23206379 (+) | True | G201154 |
