RNA id: TU235786


Basic Information

Item Value
RNA id TU235786
length 1910
lncRNA type read_through
GC content 0.42
exon number 2
gene id G199161
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19792634 ~ 19856480 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaaaaaaaaaaaaattaaaaaaaaaagtgtctttaaAACCAGATTcaacctctttttttaaatgatactgGAAATATGTGCTTCAGTGTTGTCACCATTTAAAGTGGCTCAAAAAAGTTAAATGACTACTGGAATGCTCAGTCTTCGAAGTAAAACAAATCTACAACCAGAAGATGAACAAGGATAGTGACAGAATTTGCAAACGAGCTATTAGTGAGAGTGTCCTAAAGTTTGCCACTgtagtgtttctttttctcGCAGAGTGTAACTTGTAGTACGTCAAACTTAAAAAGCTCAAAACCATTTAGGTTTTAGATATATTGTACAGGTTATTCACCGTGACCATTGTCAGCGACGTCATAGACATTGTACCGCACGACCACATTCATGCACCTGAAGAACAAAGAGTCTACAGATGAAAAAGAGGAGCTACAACATGAGAAAACTGTGAGTGAATCTTAAAGTGACCCTTTACACCTGCGTATAGCGAGAAGGAACGAAGTTGTcctaaatgtttaatgttatgtacAGAAGAATAAATTCCAGATTACTAGACAAACGagtaaatgtgtgaaatgaatgaatgatctgGATTTTCATTCATATGTGGCTTGACTTGCTCTTGGCAGAAACAAAACCAGTGACTAATTATTTAACCTCTTAAACCTGTGAGTACACATTGAGCTCTTGGCACTCTAAGAAATGTTAAAGTTTTATTTCTGCTCAAGATTTTGGATATTACAGTACAAATATGCAGTAAATCATTAACTCAGACTGCAGACTGAGCTGTCACTCATGAAGAATTGTGCAGCTCTATGATATAGTAGAGCTAAAGGAGTGGAAAGAGATTGATCTTAACTTCACTGACCACTTGTCTGTCTGTGAAAACACCATTTTCAGGTAAAGTTGTTTGGGTAGAAAAGCGTGCCGTATTGTGACGCCATGGCTGGCTTTGTAGTACCAAACATTAGCAGTAGCCACAAAGTGCATGAATTGCAACATAAAGGTTAACTTGATTTTCAGTGTACACAAATctaacatcaaaaaaaaaattatattagtgAATAAGTTTGttcacattattaaataaaaagtgtaactTGTGCTGGAACATCTGGTGTTTGGGTGTTCTGTAATAGTCTTTGAGCACAGTTTTTCTATTAAAAGTCTAGGTTTCAGGAAGTGGCTTTTGCTGAAAGCATTTGTTAGTGGTGAGGATCTCCACAATAGTTCTTGGAGGCCTGGAACTACTTTCCTACTCTAAGTGTCCCTATTGTGTGCTTGTTCATTTGCTGCATTTGCTTCAGTTAGAACGTGTTTTATGAGCTGAATCACGGTGTTTTATGAACTTCAGTTCCGCAccctttgttttgaaaagttgTTCACATTGGGCAGAGAGTGACACTGACCCCCTCCCCGATCCAGCAGGCAGGATAGAGCTCATGGGAAAAGACGCAGTGGAAGGCGTGCAGCCTCACCTGGTTCTCCCCATAATAAGCCAGAGTGCCTTCGTCATAGTCCAGCAGCATGCCAATGCGCAGAGGCCGTTTGTTTAACTGCAGCTCGCCTGTTACAGGCTCTCCATGGCTACCGTGCCAAGCGGTGAGCTGGCGCTCATTCAGCTGCAGGCTCCATGACAGCTCATTCATTCCCAGCATGGACGTCCTGCCTTTCTCCTTGCGCGGGATGCCGGGGTACGTCACACCTACATACGCCCACGGTTTGGACACCTCCAGCTCCCAGTAGTGGCGACCGTGTGTGAAATTCTCAAAGCACAACACTTGCCAGGTGTGGTCAAAGCGTGCCTCGTCAGCTGGCACTGGATGAGGCCCTGAGATCAGGTGCTCCGCCCGCTGGTTGTTCTGAGAAAGCATGAGGTGAGCGTTGGCTGTGCgagggtcaaaggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235663 lncRNA upstream 366039 19426380 ~ 19426595 (+) True G199051
XR_003402870.2 lncRNA upstream 477819 19309483 ~ 19314815 (+) True LOC113527366
TU235481 lncRNA upstream 968073 18823633 ~ 18824561 (+) True G198901
TU235464 lncRNA upstream 1023944 18768393 ~ 18768690 (+) True G198886
TU235453 lncRNA upstream 1088935 18703475 ~ 18703699 (+) True G198876
TU235814 lncRNA downstream 20261 19876741 ~ 19885988 (+) True G199187
TU235845 lncRNA downstream 87764 19944244 ~ 19944466 (+) True G199216
TU235846 lncRNA downstream 94307 19950787 ~ 19953308 (+) True G199217
XR_004579191.1 lncRNA downstream 378335 20234815 ~ 20251474 (+) False LOC113527335
XR_003402864.2 lncRNA downstream 378336 20234816 ~ 20251474 (+) True LOC113527335
XM_026915899.2 mRNA upstream 72880 19694398 ~ 19719754 (+) True c12h10orf90
XM_026915900.2 mRNA upstream 72880 19694398 ~ 19719754 (+) False c12h10orf90
XM_026915793.2 mRNA upstream 228436 19526642 ~ 19564198 (+) True LOC113527713
XM_026914625.2 mRNA upstream 419285 19370326 ~ 19373349 (+) True LOC113527107
XM_026915567.2 mRNA upstream 871868 18828421 ~ 18920766 (+) False ebf3a
XM_034309279.1 mRNA downstream 6832 19863312 ~ 19871403 (+) True mrpl38
XM_026915770.2 mRNA downstream 156227 20012707 ~ 20017504 (+) True gpx9
XM_034309636.1 mRNA downstream 330325 20186805 ~ 20200130 (+) False LOC113527727
XM_026915810.2 mRNA downstream 330344 20186824 ~ 20200272 (+) True LOC113527727
XM_034309635.1 mRNA downstream 330346 20186826 ~ 20200130 (+) False LOC113527727
XR_004579324.1 other upstream 225950 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 980372 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 981122 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1282475 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 1634005 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 2146344 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 2152031 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2941701 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 3349186 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3467593 23324073 ~ 23329571 (+) True G201214

Expression Profile