RNA id: TU235846


Basic Information

Item Value
RNA id TU235846
length 2432
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G199217
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 19950787 ~ 19953308 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAAAAACcagacatgtttgtttttatgccaCATTTACTTGCTGAAACCATTTTACcaaacagaataataaatatattatatgatGAGAACAAGTGAATCTCTAAATGTGATTGCAGAATCTCATCACCATGACTCACTGAGTTAATAATATTCTAATAGACGATGCCTCAGTAattaatatacatacattatacagaCATTACAGTTTCACCTGTGTATTAATATCTCTCGTACAGGTCAAAGCGTGCCAAATAATTTAACGTGGAAACGTTCTGACTGAGCATACAAAGGACTGAGCATATAGGCCTATGCTGGACAAGCTGCAGTTGATGATCCATAAACTGATAATCCATGATCCATCCATGTACCGAACATTCAACATacatctgatgtttttttttccaagcactcattcatatacacatacaaaacataacacaataATGGACCAAATCGTAACCACTTCccaagtgaaaaaaatcacagacataCTGACACCATTTACACCTAATCATTTCATGTGTCttgtatttcaaataaattttgaAGAAAGATTTACATTCAATTATTGGTCATATGTCTGTAGTTAGCCAGTTTGCTGTATCACTCTTAATAAGCATAATAAGCTTTCTAAGCTGATCTTTGACCTAGTAGTCCTATGCAAAATCGGctgccatatttaaaaaaataaataaataaaaaaaatcacattttatgtTCAGGTTTACCTTAATGGAGCCAGCTGTCTTAGGATGTAATATACTGgtggtttgtttttcacatgggTTATCACATGTGGCTTTGAAAGACATGAAAATGGTTACATAACTGGATTTAAGTTGTTGTAAATGCATTACATCCAGAATCAGTCCGGACATCGGAGACGCATGAAACAACCAGGTGTAATAGGAGTCATTCAGAAAGCAAGGTAGGAAACATGAGAAGCCTAAAAGACAGCCAAACGACATGGTATATTTCTCATCACCACTAGATTCACTGCTTTTCTGCAGAAGAGAGGAGATTACAAGAAGCCATCACTATTCAGCCATGCTGGCCACAATGGACAAAAACACTCAGCCAAGAAAACCAAGAAAAAGAACAGGGACAAGTAACAAGTTATAATATTCAAAGGTAAATAAACTCCAGAGACGTATAATAAATGTAAGAATATTTAAGTTTGAGTGCAAGAGACATTCTGGGGCATACAAATTTTTGCATTCAAAATGAAAAGCCACTTGTTTGATCCCTCTACCAATATAATCTGCTCAGtccacaagtttttttttctttttttgttaaagatgTAGTGCCACATGGAGTTATttatcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactgctttACTCCATGGTTGATTCTGGGAAGTGATTTCTGGTTAAAATAAAGGGCTGGACAAAATTCATTCAAAATGGCTTCCGGCTTGACTATATTGCTATACACAGGGCACAGGTTTTCAGACCCCTGGTACTGCACTAAAATCATACAGGGAGCTGTTTGGGATTCAATCCAGCTCCATACAGAAATGGAACAGCTTTGTGCTGTTCTAAGCTTGTATAAAATTGTGGGTACAAATAAGGAGTAACCTTGTGGAATGAGATGCCCTTTGTTCCTACGAGcttaactaaaataaatagtGAGTGGTATTTCAGTATGTTTTGTAAAAAGACAGATCGCCAACACCATCGATTTTATTTTGACTGAATGACCCTTACACAACTGCAGTTATGACGTTGCAGTGCTAacagtcatttttaaaggtacagAGCTCTTTTGGTCCTAAGATTGATTCGATCTGAGATTTGAGTGTGCAAATCCAAAGAACACATGGAAACTGAAGATGTGAAAGAAGGACAAGCAGATAAATTCCTTCTGTCTCTCAATTCAGCCCTTGACAAACACCATGGAGTGTCTCACACACGTTCCTGTACCTCCACATCATTACTCAGCACCTGCACTGTGACATCTTTGACCAGACCATGATCTCAGAGTCAGACTCAGTCAGGATCTGTGCCAATACCTCCAGGCACAGAGAGCAGGAAAAGAGAATGATCTCACTTCCTTCCTAGTACAAAGAGCTTGCTGAAAGGTTCCTGAGTCACTTCCTGACAGCCTGACGATAGCTGTGTCTCTGGCCTTGGCTGGTGCCGGTGCCATTGCCTGTGCTGGGAAGTGCCTTATCTCTGGCGCTGCAAGTGCCACTGCTCTCCTGGAGACTGGGGCTGGACTGAGCCCTCTGCAGGGAGCCCTCTGCCAGCAGCATGGCCTCAAACACTGAAAGATCGTCATTCCCACAGCGTTGCTTCGCTCTCAGCAGCATGCTGTACGTCTCATATCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235845 lncRNA upstream 6321 19944244 ~ 19944466 (+) True G199216
TU235814 lncRNA upstream 64799 19876741 ~ 19885988 (+) True G199187
TU235786 lncRNA upstream 94307 19792634 ~ 19856480 (+) True G199161
TU235663 lncRNA upstream 524192 19426380 ~ 19426595 (+) True G199051
XR_003402870.2 lncRNA upstream 635972 19309483 ~ 19314815 (+) True LOC113527366
XR_004579191.1 lncRNA downstream 281507 20234815 ~ 20251474 (+) False LOC113527335
XR_003402864.2 lncRNA downstream 281508 20234816 ~ 20251474 (+) True LOC113527335
XR_003402865.2 lncRNA downstream 281508 20234816 ~ 20251474 (+) False LOC113527335
XR_004579193.1 lncRNA downstream 281509 20234817 ~ 20251474 (+) False LOC113527335
XR_004579192.1 lncRNA downstream 281510 20234818 ~ 20251474 (+) False LOC113527335
XM_034309279.1 mRNA upstream 79384 19863312 ~ 19871403 (+) True mrpl38
XM_026914969.2 mRNA upstream 97037 19845510 ~ 19853750 (+) False wbp2
XM_026914968.2 mRNA upstream 97037 19845512 ~ 19853750 (+) True wbp2
XM_034309274.1 mRNA upstream 109761 19830602 ~ 19841026 (+) False dhx32a
XM_026915770.2 mRNA downstream 59399 20012707 ~ 20017504 (+) True gpx9
XM_034309636.1 mRNA downstream 233497 20186805 ~ 20200130 (+) False LOC113527727
XM_026915810.2 mRNA downstream 233516 20186824 ~ 20200272 (+) True LOC113527727
XM_034309635.1 mRNA downstream 233518 20186826 ~ 20200130 (+) False LOC113527727
XM_026915022.2 mRNA downstream 249286 20202594 ~ 20228997 (+) True LOC113527333
XR_004579324.1 other upstream 384103 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 1138525 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 1139275 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 1440628 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 1792158 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 2049516 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 2055203 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2844873 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 3252358 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 3370765 23324073 ~ 23329571 (+) True G201214

Expression Profile