RNA id: TU236496


Basic Information

Item Value
RNA id TU236496
length 204
lncRNA type intronic
GC content 0.43
exon number 1
gene id G199796
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 20595241 ~ 20595444 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTttgctcatcacacacacacacacacttccctttaATCGTTTCGTCATTCCCCCTTTCTCAGTCACCTCTCTTACTTTCTGTTCCTTCTACagagaaagcactgacactgctTCATTAATAATAGGCTGGGCTTAGCAGACCTACAGCTGAATACATtgcaagtgtgtgtgacagaaagagggacagaaaatgcttttaatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579191.1 lncRNA upstream 343767 20234815 ~ 20251474 (+) False LOC113527335
XR_003402864.2 lncRNA upstream 343767 20234816 ~ 20251474 (+) True LOC113527335
XR_003402865.2 lncRNA upstream 343767 20234816 ~ 20251474 (+) False LOC113527335
XR_004579193.1 lncRNA upstream 343767 20234817 ~ 20251474 (+) False LOC113527335
XR_004579192.1 lncRNA upstream 343767 20234818 ~ 20251474 (+) False LOC113527335
TU237058 lncRNA downstream 788632 21384076 ~ 21386033 (+) True G200325
TU237068 lncRNA downstream 861975 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237153 lncRNA downstream 1014810 21610254 ~ 21610457 (+) True G200418
TU237157 lncRNA downstream 1044250 21639694 ~ 21643654 (+) True G200420
TU237170 lncRNA downstream 1057787 21653231 ~ 21654736 (+) True G200430
XM_026915117.2 mRNA upstream 94708 20319289 ~ 20500533 (+) True ryr2a
XM_026915119.2 mRNA upstream 94708 20319289 ~ 20500533 (+) False ryr2a
XM_026915118.2 mRNA upstream 94708 20319289 ~ 20500533 (+) False ryr2a
XM_026915124.2 mRNA upstream 94708 20319289 ~ 20500533 (+) False ryr2a
XM_034309514.1 mRNA upstream 94708 20319289 ~ 20500533 (+) False ryr2a
XM_034309461.1 mRNA downstream 68250 20663694 ~ 20753768 (+) True fmn2b
XM_034309462.1 mRNA downstream 68250 20663694 ~ 20753768 (+) False fmn2b
XM_034309463.1 mRNA downstream 68250 20663694 ~ 20722170 (+) False fmn2b
XM_026915458.2 mRNA downstream 317274 20912718 ~ 20918024 (+) True hhex
XM_026915237.2 mRNA downstream 383743 20979187 ~ 21008385 (+) False lzts2b
XR_004579324.1 other upstream 1028557 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 1782979 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 1783729 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 2085082 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 2436612 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 1407380 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 1413067 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 2202737 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 2610222 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 2728629 23324073 ~ 23329571 (+) True G201214

Expression Profile