RNA id: XM_026914739.2


Basic Information

Item Value
RNA id XM_026914739.2
length 3777
RNA type mRNA
GC content 0.44
exon number 2
gene id si:ch211-216b21.2
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21457391 ~ 21500929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTCAGGAAGCGCGCAGGCAGTGGAGCTGGAAGTTTGCTGCAAAGTTGACAGGTCGTTTTATATGTGTACGACATGAGCACTGGAACTGTCAGCTCTTTGTTTtcgttttattttatatgcaaatgATCTGTTTTCGCGAATGAATTTATTTGGAACTTGCAGCTGTAAGACAGGTTGGATGTGTGGGTTAATTACAGATGATAATTAATTGAAAGTTGCATTAAAAAGTTTAGCAGATGAAGAAACACGGCTACGCAAAGTGAACTCTATACTGCTTTCAATCCCACTTCATTTTGGAGATAATTTTTGATGCATCTTTTGGATATCCAGCCCAGAGAATGTGCGTCTAGCATGGCCCCGGCTCGGACTACCGCGACGCGTGGCGCGACATGGCGTGTAAATTACCGGGGAACACCCCCGTGTCCGGTAAGAGCATCCTGAGGAGGTGTGCGGTCATGCTGGTGTCGCTGCTCGCCTCCTTCTACCTGCTCCACAGCCTGACGCAGCTCGGCGGCTCCGCGCTGCGCTCACCGGTGTCCGCGTCGGTGTCCGCGTCGGAGCTCGTCGACGCGTCGGAGGCGCCGCTGCGGAGGAAGCGCGTGCTCCACCGATGGGTCGTCGGCTCGGTTGCTAGGCAGCGCTTCGACGGCGGAGGTGACGCGCCCGGACCGCAGGTCCGCGACGCCGCGCTCGGCTTTCCGTCAGCCCCCGGGAAGCTCCGGCCTCTCGGTGACGGGACCAAGCGGCTGCCGCAGGCCATCATCGTGGGCGTGAAGAAAGGCGGCACGCGCGCGCTGCTCGAGTTTCTCCGCGTGCACCCGGACGTGAGGGCGGCGGGAGCCGAGCCGCACTTTTTCGACCGTTTCTATGACAACGGATTGGCGTGGTACAGAGACCTGATGCCCAAGACCCTGGAGGGTCAGATCACCATGGAGAAGACACCCAGCTACTTTGTGACCCGTGAAGCTCCAGCTCGGATCTACTCCATGTCACGTTCCACCAAACTCATAGTGGTGGTGAGGGATCCGGTCACCCGGGCCATCTCAGACTATACACAGACACTGTCAAAAAAGCCAGACATTCCCTCCTTTGAGAGCCTGACTTTCAAAAACAGGACTACAGGCCTTATTGACACCTCATGGAGCGCCATCCAGATCGGCATCTATGCCAAGCACCTGGACAACTGGCTCCAGTTCTTTCCCATGCATCAGATCCTGTTTGTGAGCGGCGAACGGCTGATCAGTGACCCAGCTGGAGAGCTCGGCCGTGTGCAGGACTTCCTGGGACTCAAGAGGATCATCACAGACAAACACTTCTATTTTAATGAGACCAAGGGCTTTCCATGCTTGAAGAAGGCTGAAGGAAGCAGCAAACCTCACTGCCTGGGCAAAACCAAAGGCCGAACTCACCCCAACATCGACCCTGAGGTGGTGCAGAGGTTACGAGACTTCTATCGGCCCTTTAATATGAAGTTCTACCAGATGACTGGAAGGATATTTGGCTGGGATGACTAACTTTGTGAAGTGTGAGGAAAGACCATACACTATGATTGCTTGCAGTTCCACTCAGTACAAGAAATACACCAGTATAGAAATGAAGTTTAGTGGACCCTTATGTTCTGTTCATTTCATAATGTTTCTATGATACATTGATAATATTTACGTTTATGTATTCATCCTACACTTTTTTCCAAACagagggcccaacagtggcagcatGGTGATCCCGATCATTAACACAGAGCCTTAACCAATAAAACACCACTGCCCCTTACACGCTTGCCTCAGTTTCAGTAACGAGTATGTAACACCATTTTGAAAAATTCTGTTTGGATGAGCATgactcatttaaaaacaaattggaacacttgcaaaaaaatattgttCTAACTTAAACTTTGTGTTTAGTCCAATTTCTTTAATGAGGGTAAGAAGATCAAGTAAAAGTGTTAAACATAACTgttctttatcattttaatcactttcatATTTCTTTCCAGTCTTATTAATATTCCCTTTTGTGCACACAAACCAACCATCAGAAGGTTCCCCTGATGCACTTTTAGGAAAATGGGTTTCTCagaggttctttggatagtttgGATAGTTTGGCTAGAGGATCATTAGCTTGCTAAAGAGGATCTACTTGGAATCTTCTTTCTTTGAAAGGGAACCCTCCATTGTAAGATTCTACatggaataaaaaacaaaccaaattgTAAAGGTGCTAAATGGGAACGTTTTAAaacttgtatgtgtgtatggtatactgtaatattgtattatagcaaataattgaGATTAAGGTATATTagatgtttaattatttttaaattaatttctaattaatgTCTAATTAATTTTTACAATAGTATATGTATAAAAGCTAAACAGATGCTTTGGGTGAATGGGACATCCAGTGAACAGAACGTGAGGGTTAAGTGTATGTCATTGATCTCATCAGCAACAGAGACCTATGCAATTCTTTATTACTTATGTCCAGTCCAGTCCAGATTATCCAGATTGGTTATTTGCATGGTGCCAGGGGTGAGGATGTCGTTCTTCTTCAGAGGTTCCATCTGCCCACCACAGATTGAAGTTCTCCCTACCCTAAACACCCTTGGTGGCTCATTATGGGCTTActaattagctagttagttGGATCAAATGTgtattcagtaaccactttgttgtggtgaatccagagcctattccaTGAGCACTGACCATGAGGCAGGAACGACATGGGAGAataccagagaacccagaggaaacccacatggacatgggaaaAACATGGAAACTCCACTTCCAGACTGAAAAATTGTGCAGGGCAGCAGGTCCTGAGCACCGATGTTCAGAACCGCTGGTTAACTCTAATGCACTGAAACACCATCAGAGAGCATTGATCTTTCCGGATTTTGTCAAATTTCTGGATTTCTCTAGAACTATGCATCATTTCCGATGAACACTTATGCTCTGTGAAGCAtcaaatgatgtaaaaaaaagtgttcagtcCAGTTTTGccataattttattaattccCAGCTGCTTGTAAAGCTTTGCATTAAAACAAGATCAAAagataaaaactatttttaaaatatatttattttaaaaaatgatgcaaGCCCACATATAGtatagatatttttaataatcctCACTGGGATCTGTCCTCAACTGTTGAGTTTTGAGTGCATAATgttacatgatgtttttttttttgtaccttatAACACCTTTTTCTAACCTAAATCTGAATTCTGTATAATTCTATGTTCCAAATATTTGcttttctcacttttctttACACTCCATACCACGCTATGTATTTCTCATTTCACAGTTGGTgcagttatttgtttttaatgccaATGATTGCAGCTCAGGTGCTCAGACACAGTCCGtggtgtgcgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgatgttgaACATGGTCTCACTCTGATGGTTTGTGTCGCACCGAACAACCCCACATTGTTTCTGTTGTATTATTTCTGATCGCGTCACACGCTTTCATGAGTCTGTTTTGTGATGCTGCTGTGTGGGCTgtgaatggatgtgtgtgtgtgtgtgtgtatatatcagAAATTTACAGTGCCTCAAGGGAGCACTCACTCATTCTGCAACCTTTTCAATGACAATTTCGAGAGAGCAATGCAACTGAGGTTTTTCTTTGGAATATTATCAATCAtgtgttgctgttttttgttgctttaatttaaacccatatggatttttttt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K07809 HS3ST3; [heparan sulfate]-glucosamine 3-sulfotransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237058 lncRNA upstream 71358 21384076 ~ 21386033 (+) True G200325
TU236496 lncRNA upstream 861947 20595241 ~ 20595444 (+) True G199796
XR_003402864.2 lncRNA upstream 1205917 20234816 ~ 20251474 (+) True LOC113527335
TU237153 lncRNA downstream 109325 21610254 ~ 21610457 (+) True G200418
TU237157 lncRNA downstream 138765 21639694 ~ 21643654 (+) True G200420
TU237170 lncRNA downstream 152302 21653231 ~ 21654736 (+) True G200430
TU237306 lncRNA downstream 473300 21974229 ~ 21978282 (+) True G200555
TU237307 lncRNA downstream 478154 21979083 ~ 21979381 (+) True G200556
XM_026915385.2 mRNA upstream 304465 21139857 ~ 21152926 (+) True pmp22b
XM_026915607.2 mRNA upstream 336438 21112476 ~ 21120953 (+) True tekt3
XM_026914643.2 mRNA upstream 387927 21062462 ~ 21069464 (+) True LOC113527122
XM_026914644.2 mRNA upstream 387927 21062462 ~ 21069464 (+) False LOC113527122
XM_026915237.2 mRNA upstream 449006 20979187 ~ 21008385 (+) False lzts2b
XM_026915925.2 mRNA downstream 112029 21612958 ~ 21639584 (+) True unc13d
XM_026915418.2 mRNA downstream 252412 21753341 ~ 21777831 (+) True kcnj16
XM_026915419.2 mRNA downstream 252537 21753466 ~ 21777831 (+) False kcnj16
XM_026915823.2 mRNA downstream 282100 21783029 ~ 21790227 (+) True kcnj2a
XM_026914870.2 mRNA downstream 435486 21936415 ~ 21959218 (+) True itgb3b
XR_004579324.1 other upstream 1890707 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 2645129 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 2645879 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 2947232 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 3298762 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 501895 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 507582 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 1297252 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 1704737 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 1823144 23324073 ~ 23329571 (+) True G201214

Expression Profile