RNA id: TU237157


Basic Information

Item Value
RNA id TU237157
length 3961
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G200420
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21639694 ~ 21643654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGAATGAAATACTGAATGGTTTCGAGCAGACAATTACAGACCTCACAGTGAAGCTCTGATCTGAAAAGCTTAAAAAGGAGTTGAGTGTAAACTCTTTGCACAGCTCCAGCGTGATTTCATCTCACcagctgctgatctcctgatgaGCTGAATTAAGCTTTATTAGCGAGAAAACACTACTCTGTGTAGCAGCCCTTCATGACAGAAACTAAGGAATGTGTAGCTAGACCTGGTCTTAATCACCACTCCACTCATCCCTACATGATACCAGTTTATCCAAAGTGGCTGTGCAGTCTCACACTCCATGTTTCTACGTTGTACTCTAGCGGGTGGGCGGAGTCAGTGCAAAGGACGCTAAATCAAACTTCACTATTAGACACCTGTCCACACAAAATACCAAACCAAGTCAAAAGCTTGAAAACGTAAGATAGCTTTCAGTAATGCTATACTGCTTCATGTAGTGAAGACATTTAAAGCGTTATCAAATGAAATCCCAGATCTGTGTAGACAAATTAAGCACACCATGAATATTCATTCAGAAAATATCCTAGAGAGAGATGCACCAAGTATTCCCGATTTTGATATGATACCGATATCACAGCTCTTGGAACAGGTTGAGATGAATAATCAAGTCTGATCTCTGAGAGCTTCTGTAGCTCTGACTATGgaatattaaatcattttatcaaTTATATTTTTACCACAGCGCTGAAGAATTCTCAAATCCGATTGGCCAGAAGGTTAGAAATGTGTTTGCTATAACcacaactctgacagtagttcaatAGCAAGATATATAACTTGTTTTGCTAACATTCCACAACAAGTATAAACCTAAAAAGTATGACACGCCATTCTttaacaaattgctgtgatataggaggataaaaaaaacacttcaggacatgctgttatgagaaaataatcagcttctgaGCGGCtgcatcacactgattattttcttataaccgCACACCCCCAAATGTTTTCCTtacttattttataaataaaatgctttatgaAATGAGCAGAACTGTGCAGAAGTCAGACACCGCCCTTTCGTTTTCATTCAAACAGCCAcgcagtatttatttatttaggccaatattacatattagaatattacaaataaaatatttacagatttcatattatttttactgttgaaGACATTTGTGTGAGTTtctattaaatacattttcccatcattattgttcattattgtAATTGTTCCTAAATCACACCGTCTTCAACACTAAAAACAGAacgaaattaataaatattttatatgtaatattgACCTGCATAAACAAACACTGTAtggctgttttatttaaaatggaatTAATGTTCTCTACATTTTCCCATCATAACTGTTTGCCTACAAATAATTAACACTAAGTACTGAATGGCCAAACAAAATGGTGGTCTCTGACTTGTGTTTTTTTGCCTAACATACTACCTTAATGGGTTAGTAACATCCATTATTACAAATGCTAGGCTGTATGAAAATAGATGAGCGTGCAATTTGGAAATGGACCCACGTCTTCTGGATAAAATTGGAAAACTAGCTCGCATTGGTCAAGGGTCAACGCAAGTGTGAGTCTTGATTTGCATAGTCGCAATactcactgatttatttaaacagcAGCCAAACTATAATCAAAAATCATGTGACCTTccaataatttgcataaactgTGGAGTTTAGTGACTAACAGAACTCATTCCAAATCTGCTTTATACACAGGTACTGAGAAAGTCTCGGTTATAACATGCACACTGTGCTAACAAATGCAACCCAAACACCAACCTAAACAATCTGACTCGGCCACCTAAAAACAGGTAACTATTTACAAATCTCATTCTGAGCTCAGAGCTACTTTAAAGACAGTTTGTGCcttatataattacattattatctGTGTGGGGTCAGTCAACCACCCACACTTTCACAGCATTAGAAAAATTTGTCAAATCTGATCCAACAGCGATCCAAATATCGGTCTCATATCAGTACCCCATATCCAACTGGTGCATCCCGAACATTCACCCagtaacacattcacacaccgtATTGTTAATCTCAATCTCCGTGAAATAATCCGATTGGTTGTTCTGACATTTCCTGATCCGCCTGGAAAATCTGTGTGTTCTGGCAAATTCTATTTTTACAAAAACTTCGATTTCTAAATGAAAAGCAGATCAATGGACTGGAAATACGAGTTGAAATAATACAGTGCTGATGATAAACATTCATATGGCTGATATTTTTGTTCCCACAATCCcaccattttttctttttatgataATATtgaaaattcagtttaaaaaaaaaaattaccactAGTCAATTTCTTCTGGGCTTCTGAAAAGAAACAACCCGGTTCTAGCCAACAGCCATATATaagtaagtatgtgtgtgtgtagaagaaggGAGAAGAGGAGCAGATCTCAGATTGGTGTAAAGACAAACTTTAGAGAGGGGAAAGCGAAAGCCCTGGAGACCTGTGTGATCGTCTTCTATCACACCAAATTCGTCCTTGGTTCTGTGTTAAATTAGGTGTGTTAAATGAGATATAATGCTAAACTGTGCACGATGTGGCCCTGGAGTCTGACCCCACTGTCTTCATCTGACGATAAACTTCAAACGGTGAAAGAACTGAATAAGAAAGAACTGGCACTTGAAAAGAACTTGAATTCTGCAACTTTCGTGTGCTGTGTCTGAAATCGCTTTgtgactcattcattcactattTACTGTTCTGTATAGAGCACTCTACAGGGGGCAGCAGTGAGAAGACACTGGACTGGATAAATAAAGAATTTGcttattataaaaatacagaagtattaaaagtgattttttttgcattaaacatGCAACTAAAAAGCTTctattagtttttaattttttttaaatttatactgatatataaagtcagctgctttggtgtctATTTTGACCAATACATTTTGAGTTGAAAGAAATCTCTACGCATTGTGGTACCCATGTGTACCCTAGATTTATGGTGCACTATCCAAGAAATACTGAGAATTCAGACAATACAAATCGTTGCACCCAAAAAAGTGCATTAGAAGGTGAATGAATGGAGAGCTGCCCATGAGATCGACATCGTGACATCTCAGTGAAAGGGTACTAAATGGTACCTTTCCTTCTGTACCTTATTTTTTACACCTTTAGTAcgtatcttttatcttttaaagctttactcaaAAAACACTGAAGTATCTTAAATCAATTTTAATGGTACACTATCAAAGTTGAAAGATAcacattaaaggtacaaaagggtACTATaatactaattttttttctgagagtgtgtggtTTAAATGTTGTGCCCCTTGTTCAGGAGCACGTCTGATTGCAGGCATGAAAGCAGGACACATTATAGCGTGATAATAACTTATCCAAGATAAGTCCAGATGTCTCTAAAACGAGCTCATTGAGTAAAAGAAAAGGATTTGGGAAAAGATGAGAGGTTTGAAGAGTAGTGTTAGATAGAAGTAAGGTAAAAAATCAGTGCAGAAAGTCTGTCACTGTTGTGGATCTGACAGTGCATTTTAAAACGGTcatattgttcatttttgcCCGTATTTGTTTCTAAAGATCAGGGAGTGTCTGTGTATGAGAACTACAAGCTGAGGTAAAAAGTTTTACTCGACCATTTCAAACCTTCCCCTGGAGATCCAGCTTCCTGCAAAAAGCTTACAAAGTGATAACCCTAGAACCTGCATAATTATAACCCTAATTTATCTTATTGTTACATCTAAACATGTATCTGAAAAAGCAGCCAGATGCACCAGTCACACTTAAATTTAGCCGTAATTCAGGGTCTTAAATCTATCCTTAATTcaaataaagttattttctaaccagcctctctttttttctctgctgaAGTTACAGTTTTATCGCTGATTCTTACAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237153 lncRNA upstream 29237 21610254 ~ 21610457 (+) True G200418
TU237068 lncRNA upstream 181930 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237058 lncRNA upstream 253661 21384076 ~ 21386033 (+) True G200325
TU236496 lncRNA upstream 1044250 20595241 ~ 20595444 (+) True G199796
XR_004579193.1 lncRNA upstream 1388220 20234817 ~ 20251474 (+) False LOC113527335
TU237170 lncRNA downstream 9577 21653231 ~ 21654736 (+) True G200430
TU237306 lncRNA downstream 330575 21974229 ~ 21978282 (+) True G200555
TU237307 lncRNA downstream 335429 21979083 ~ 21979381 (+) True G200556
TU237310 lncRNA downstream 342708 21986362 ~ 21987001 (+) True G200559
TU237311 lncRNA downstream 343866 21987520 ~ 21987869 (+) True G200560
XM_026915925.2 mRNA upstream 110 21612958 ~ 21639584 (+) True unc13d
XM_026914739.2 mRNA upstream 138765 21457391 ~ 21500929 (+) True si:ch211-216b21.2
XM_026915385.2 mRNA upstream 486768 21139857 ~ 21152926 (+) True pmp22b
XM_026915607.2 mRNA upstream 518741 21112476 ~ 21120953 (+) True tekt3
XM_026914643.2 mRNA upstream 570230 21062462 ~ 21069464 (+) True LOC113527122
XM_026915418.2 mRNA downstream 109687 21753341 ~ 21777831 (+) True kcnj16
XM_026915419.2 mRNA downstream 109812 21753466 ~ 21777831 (+) False kcnj16
XM_026915823.2 mRNA downstream 139375 21783029 ~ 21790227 (+) True kcnj2a
XM_026914870.2 mRNA downstream 292761 21936415 ~ 21959218 (+) True itgb3b
XM_026914659.2 mRNA downstream 317464 21961118 ~ 21966277 (+) False nat9
XR_004579324.1 other upstream 2073010 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 2827432 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 2828182 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 3129535 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 3481065 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 359170 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 364857 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 1154527 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 1562012 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 1680419 23324073 ~ 23329571 (+) True G201214

Expression Profile