RNA id: TU237306


Basic Information

Item Value
RNA id TU237306
length 3981
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G200555
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 21974229 ~ 21978282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtttattgtttttgtaggtttcatttttataaaagtgATCAGTGTATAGACTCAGTTCATCTCTTCTACTGTGGATCACAGTAATTGCTCCGATGGGTGCAAAGTGACAATAAGACAGAACAAAAGTCTAAATGAATCATTGCTTCGTATGTGTTTAAGATGGAAGCCGTCTCTAACACAATGCAACGTCTGGAGTGTTCTCGGAGACCAAACCTCTATTCGACAGATATAACTTCACTGCACAGCTACACGTCTATTGCATTCAAGGACAAATTCGGCTAAACCCGTAGACCTGCGTCATCTGTGTGACCTTCTGTACTGATGTTGCAGGGgctactgtaaactgtaaatatctACCGCAAATGTACACTTCTTTAAATAACACATGTAGACCACCAGGCTAGTGTTACATGCACCACAGATTTGTGGTctaaggaaaacaaacaaacaaatggacGTAAAAGCTTATTTTGTAGAAATGATTTTTATAACATCACATCGTTATTAATATTCCATTGAACACATCTGACACAACTGAATTGCTAGTTTATTAGTTACTAGATTGATATCGGTAATAAACTGGCGACCTAGCATTTCACAACGATAACAAGTGCTAACTAATATAAAATCAAAAcgggacattttttttttctcaaagagAGATcataaatatgattaaattcAAAATCCTGTCCAGAGTTGTTGTTGACAATGGGCTCAGATATTAGATTATgggtcatttacatttattcatttggcaaatCCAAAGTGTGTCCCTAGCTAAGAAAGTGAGAGgctaaagtttaacattttaTCACCAGACGGTATGACACAGCACAGTATCCTTTCTAATCTCATTCCAaatgtacctttagtgtgtatcttttacctagaaaagtGCATGGAGTGTatatttaaagctttttaaatatccaattatgtaccttaaatcctTTAAAGatgtattCTTGAGTGACAAGGACATATTCAGTTTAGTAGTTTTCCTGAGAGTGTGTTCAGAACGCTTGTGAAGTACCTCCGCCCAACAGGACCTAgaagggatgtaaccaaatacgaatacattattctgaatgaacagatcatttgttctaaacagatacaaataaaagagataaaaaagagGGGCactattagtttttatttttttagaaagcttgccagaaagctatgcagggcatctggttgagactagattTTCATGCGAGTGGACAAATATGAAGCTTGCGGGAAaaacaaagaccacattcattaatgtgaacGTGAACAATACATTTACAACGATGCATTTACTGCAGTTTAAATTACGCTTCTagtttgttcatattttggaaaatacaGCCAACTTAATatgttagaaaatgtcaaaaaacttttagaaacaaggaaaaaaaaacttctggtttaggccacacccacttcaggtttaaatccgaatacagatacagatacggatatttTGAGCCCTAAATAGATAccgatacagatagtggcattgtatTATGGTGCATCCCTAGTACCTACGAAAGTAAATGGAGTTTTCTGAAGTTTGTGAACTTTAAGGACTGATTTACGTTTTACTCAGCGTTTGGTTTACGTGAAGAAACCTAAAGCAGCCAAACAAACTTTCCAGATTTCCATTATACTCATTGAGAATGTAATCAGATCTCTATCATCCAAAACATTACTCCGCTATATACAAAGTAAGAAATcgtgatgtaattttttttggaatacTATTTAGCATGCTGAACTTAAGTGACAAATTATGACTATGATTACATTTGAGCCAATCAGAGGCCTGCACTATAACTAGCTCCAAACATATGACCCTGTTGAGCACTTTTAGTACCTTGGTAAGACGGGGAACCTTATTTAGCACTGGTACCTAATTATAGTACAGGTCATTTGGTTATGGAGATACTGACAAAATGTAGGATCACAGATTTGTTACTGCACTGAGCCGTAACAAGAGGTTTGGGATTTGAACCCATAACCTTCCAGTGACCCAGTTAAGGATTACTGAACAAGTCATAGCTaattcagcagaaaaaaaaagatggaagtCAATTCTGTTTGAAAAATACAATAGAAAATGTAAGTCTGAATTGTCTATCTAACACTGACAAGCGTGtggcacatttttattttctgaatcaGTAAACACTTCTTTAGGATCTTATATAGTACAGTGCACCCATTGTCATGtggaatgcaaaaaaaacatcatatgaCCTGGCATGCCAAAGTCACACTGGCACTTTTGCTTGGCAAATCCCTCGTGCAGTTTTCTACAATCTGCTCCCTGTAATATGTGAAATGTAGCTATCCAGAAACAAGCTAACGCTTAATCAGTAAACAGATATGATTGTACCGTTGTGATATTCAAAGCATTATCTCTGTGATATATGATGGTGGTGGCAGATTTCTTCTCCACTGGCACTGATTTGTTCAGTCGGATGTAGACGTCAGGTGAGGCAGCTTTGTAGCTTTAGGTGATTTTGTGGCTTTGTAACATGCATGATGGTAAGAGCAGCTCAGTGAGGATGTGTTATTGCTCTAAAGTCCAGTTTCTGATGTGAACGAGCAAGCGAATTGGATTGTAAAATCCGCCTTCTGTTTGCTACACCTGTCGCAGTGATAAAGGAAGTGCAAACTTTGATACTGACATTCAAACACTGAATACTCTGGAGTGCAAGTGGATTAAGAAAGGATTATCTGTGCATGCAAACGTTTAGTTAGTTCACGtattcgtgtttttttttttttttaaacgtggTTTAGCCTTAGATCTTCCAGGTGCTTCGACTAAAAAAACAGTGTAAGTGACAATAGACGCATTTCCATACTACAGAAAAAAGTTATATATTaggattaaagcagcagtttgtaatttttacagCCCTCTGCTGAATGTAAGGTGTATTGCTTTTACAATGACAACACTCATAAGCCTTTCCCTCTCCTGAAAATATACTGagttgccttttaaggaaaaggggGGTATACCTGAGCAGCTCTGTTGCAGCTGAGGGCGGAGCTCATTTCTGggctggaaaaatgtaaatagaaccccgaaagttaaaaaaaaagaaaagaaaatctgatTCATTGCATGAAAATATTGCAAATGACAGTTTTTCTATTGTGTCTTTGaaattatgtgtatattatagggatacaaacactttttaaaattacaaactgcacctttaggGTGGTGTGTGTAGCAGGCCACTGGAAGcatgtacaaaatatattacTGTAATTCCTGCAATTTTTTTGACTCAACAGACTCAACTTAACCACTCTGATGTTTTAGTAATTGTAAATTTTTTAGTGAATTGGTTATTCACAGAACAACATCTACATTAAACACTGTCCAATAGTCTACTAATTAAGACTTTGTGATGCTTTCTGGTCCAAGTATGGAAATAGCTCCAGGAACAAAAAACGTTCTTGGAACTAAAATCCAGCCCAGGACTTCATTTGCTCTTGCTTGCTCTGGTGGAAATGCGCCTAAAGTGACTAAGTTCCTGTGGTTTAAACACTAATTAATACTTAACCGGAAAGTCAGAACTCCTATTTAAGTCAGACGTTCATGAGGCCATTTTAATCAAATCCACTGGTCTGTTCATCAGGAGTGTTTCTCCACATGCATTGATAAAGGAGCAGAGTGAAGGTTGAAGAGAAAGCCACTGCTGAATAGCACTCTTATTTGAGATTTGAGAAACAAACTGTTCTGGGTTTTTTAGATCAGAGGGTGAGATGAGGAGTCGGCATGGGAGTCAGATGCTGGAGGGATGCCTTTTACACAGCTAGCGGTCCGTGGCatgtttttggtgtgtttttcgGGCTCGTCCCCATGTTGGTGACACTCTTCTCATCCAGATTGATGTTGCTGTTAGAGGCATGCTGAAGCAGAGACTCCTGGGAATGCCAGTTGGCTTCCAGGTAGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237170 lncRNA upstream 319493 21653231 ~ 21654736 (+) True G200430
TU237157 lncRNA upstream 330575 21639694 ~ 21643654 (+) True G200420
TU237153 lncRNA upstream 363772 21610254 ~ 21610457 (+) True G200418
TU237068 lncRNA upstream 516465 21457419 ~ 21457764 (+) False si:ch211-216b21.2
TU237058 lncRNA upstream 588196 21384076 ~ 21386033 (+) True G200325
TU237307 lncRNA downstream 801 21979083 ~ 21979381 (+) True G200556
TU237310 lncRNA downstream 8080 21986362 ~ 21987001 (+) True G200559
TU237311 lncRNA downstream 9238 21987520 ~ 21987869 (+) True G200560
TU237312 lncRNA downstream 9904 21988186 ~ 21988754 (+) True G200561
TU237320 lncRNA downstream 21404 21999686 ~ 21999892 (+) True G200569
XM_026914657.2 mRNA upstream 7482 21961174 ~ 21966747 (+) True nat9
XM_026914659.2 mRNA upstream 7952 21961118 ~ 21966277 (+) False nat9
XM_026914660.2 mRNA upstream 7952 21961171 ~ 21966277 (+) False nat9
XM_026914870.2 mRNA upstream 15011 21936415 ~ 21959218 (+) True itgb3b
XM_026915823.2 mRNA upstream 184002 21783029 ~ 21790227 (+) True kcnj2a
XM_026915256.2 mRNA downstream 30229 22008511 ~ 22012304 (+) True srsf2a
XM_026915255.2 mRNA downstream 30229 22008511 ~ 22011852 (+) False srsf2a
XM_034309366.1 mRNA downstream 35794 22014076 ~ 22025694 (+) False LOC113527202
XM_026914805.2 mRNA downstream 50807 22029089 ~ 22035625 (+) True LOC113527221
XM_034309324.1 mRNA downstream 59690 22037972 ~ 22089270 (+) True si:ch211-119c20.2
XR_004579324.1 other upstream 2407545 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 3161967 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 3162717 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU235296 other upstream 3464070 18441886 ~ 18510159 (+) True G198737
TU234778 other upstream 3815600 18155151 ~ 18158629 (+) False pde6gb
TU237322 other downstream 24542 22002824 ~ 22003274 (+) True G200571
XR_003402874.2 other downstream 30229 22008511 ~ 22012304 (+) False srsf2a
TU237829 other downstream 819899 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 1227384 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 1345791 23324073 ~ 23329571 (+) True G201214

Expression Profile