RNA id: TU237327


Basic Information

Item Value
RNA id TU237327
length 1814
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC113527202
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 22013806 ~ 22026481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAACGCCTCGTAGGATTTAGGATTTGATCCCGAGGCTGTAGTTTACATTTTCATTGTAGGTAACGGATTGAGCAAAAAGCATGAAAGTTTACTGCTTTCTGTTTACAGAGACAGACATATAAGCTTTCAGATCCTATATTTGCAATCTGTAGGCATCAACAAATCACCGATGCTTGgctaaaaagaagaagaagaagaagaagctcgACATAAGCCTAGCTAGCTCTCCAGCTGTAAAAGTTTATTGGTGAAATTAATGGACGCCTCCATGGACATGTGGGCCATCTGGCTTTCTGTCGTCTTCACGATCATCGCTGGTTTTCTCACAGCTGTgttatttggaaaaaataaatcgGTTTCGGTAAAGACAGACGCAAGCCCAGGAGAGGCGTTTCCACCCTGCAAAGAGCAAGAGGAGAGCACCGACAGCTCCAAGGAAGCACTTCACAGGACTCAGTGAACCCCAGACTGAATCTGAATGTACAGCGCAGACGACGGAAGACCTGCCAGACGAGCCACGTGCATCAAACCAGCAAGAGCTTGTCGGGGATCAGTGTGAGGAAGCCGAGTCAGAGAATGACGAGTCTTCACACTCTGCCTCAGtgAACAGGATGTGTGAGGATGATGATAAGGATCAGGCCCTAAGGTATATGCCTGGTGTGTTACGGACGAGCCAGCTTGAGAAGATGATGAGTAAAGAAGAGCTGGAGGAAGAACAGAGAGTTCAGCAGGAGCAGCTCGCTGCAATCTTCAAGCTGCTTAAAGAAAACCAGGACACATTTGGGGAGGTGACGGAGAAAGACATGGAGGAACAGCTTAAGCTTTACTCGATCTGAAATCACTGCACCAAGCACTGGTCTGCCGTCCTGGAAATGGAAAATTAACACTAAACCTCACTGTTGCTGCTGTTCagatgtggggggaaaaaaattagttCGAAAGTCCAGAACGGCTTGAAAATAATTCTGTCACGATGTGAGGAAAAACTGAGTAATTAATAAAGTTCAGTGTGTCTTATCCTTAAACTGCACACAATTCACAACCTGTTAGTAACATTGTGTAGTAAAGATTAGGTGTAGATGTAGTAATTATCTATgtagtaatgtagtaatgtagtaatatatctatgtgtgtgtatacagtaggTACATAtacattcaccatccactttattaggaacacatgtacacctgcacatttacgcagttatccaatcagccaatcatgtggcagcagcacaacgcaaaaaatcatgcaggtacaggtcaagagcttcaggtaatgttcatatcaaacatcagaatgggggaaagtgtgatctctgcgactttgatcgtggcatggatgttggtaccagatgggctggtttgagtatttcagaaactgctgatctcctgggaatttagTCTcaagaatttacacagaattgtgtgaaaaacagtaaaacattgagtgagtgacaatTTCCACTGTGggtgttaatgagagaggttatgggagaatggccagattggttcaagctgccaggaaggctaactcaaataatcactctttacaaccgtggtgagcagaaaagcatctcagcatgcacaaaacattgaaccttaaggtggatgggctacaacagcagaagaccatactgggttccacttctgtcaaggaagaacaggagtctgaggctatcatgggcacagattcactcaaactggacagttaaagattagaaaaaatcACGTGggatttttccagtcttcagctgaaaaaaatggctgtgattcctaaatggttaaggcaatgtttttgttaaacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237320 lncRNA upstream 13914 21999686 ~ 21999892 (+) True G200569
TU237312 lncRNA upstream 25052 21988186 ~ 21988754 (+) True G200561
TU237311 lncRNA upstream 25937 21987520 ~ 21987869 (+) True G200560
TU237310 lncRNA upstream 26805 21986362 ~ 21987001 (+) True G200559
TU237307 lncRNA upstream 34425 21979083 ~ 21979381 (+) True G200556
TU237575 lncRNA downstream 87925 22114406 ~ 22114822 (+) True G200779
TU237582 lncRNA downstream 97752 22124233 ~ 22242312 (+) True G200784
TU237612 lncRNA downstream 321409 22347890 ~ 22348118 (+) True G200807
TU237831 lncRNA downstream 840427 22866908 ~ 22868838 (+) True G201019
TU237911 lncRNA downstream 1076803 23103284 ~ 23103499 (+) True G201093
XM_026915256.2 mRNA upstream 1502 22008511 ~ 22012304 (+) True srsf2a
XM_026915255.2 mRNA upstream 1954 22008511 ~ 22011852 (+) False srsf2a
XM_026914657.2 mRNA upstream 47059 21961174 ~ 21966747 (+) True nat9
XM_026914659.2 mRNA upstream 47529 21961118 ~ 21966277 (+) False nat9
XM_026914660.2 mRNA upstream 47529 21961171 ~ 21966277 (+) False nat9
XM_026914805.2 mRNA downstream 2608 22029089 ~ 22035625 (+) True LOC113527221
XM_034309324.1 mRNA downstream 11491 22037972 ~ 22089270 (+) True si:ch211-119c20.2
XM_026914927.2 mRNA downstream 11491 22037972 ~ 22089270 (+) False si:ch211-119c20.2
XM_026914928.2 mRNA downstream 11491 22037972 ~ 22089270 (+) False si:ch211-119c20.2
XM_026914930.2 mRNA downstream 11653 22038134 ~ 22089270 (+) False si:ch211-119c20.2
XR_003402874.2 other upstream 1502 22008511 ~ 22012304 (+) False srsf2a
TU237322 other upstream 10532 22002824 ~ 22003274 (+) True G200571
XR_004579324.1 other upstream 2447122 19526642 ~ 19566684 (+) False LOC113527713
XR_004579138.1 other upstream 3201544 18806085 ~ 18812262 (+) True si:ch211-221j21.3
TU235479 other upstream 3202294 18806123 ~ 18811512 (+) False si:ch211-221j21.3
TU237829 other downstream 771700 22798181 ~ 22871284 (+) True mrpl27
TU237980 other downstream 1179185 23205666 ~ 23206379 (+) True G201154
TU238054 other downstream 1297592 23324073 ~ 23329571 (+) True G201214
TU238026 other downstream 1331030 23357511 ~ 23398660 (+) False polr2a
TU238950 other downstream 2355306 24381787 ~ 24382287 (+) True G201962

Expression Profile